Pairwise Alignments

Query, 258 a.a., hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 332 a.a., putative integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 83.2 bits (204), Expect = 6e-21
 Identities = 63/228 (27%), Positives = 104/228 (45%), Gaps = 10/228 (4%)

Query: 6   SFMKEVADGLRESGNYGTAHIYRSSMSAILAFHGSDKLPFRKVSQEFLKSFESYLRGRNC 65
           S+ +E    L ++G+ GTA  Y +++ ++         PF  +S   +  +   L     
Sbjct: 111 SYFRERIRVLFDTGHEGTAKAYEATLHSMQKHLCKTDFPFAHLSSRLVIKYRDTLLEAGV 170

Query: 66  SWNTVSTYMRTLRAVYNRAVDRHLAPYVPHHFRYVYTGTRADRKRALDKEDMERLMKELP 125
             NT+  Y+  ++AVY R     L    P  F  +   +    K++L  + ++ L     
Sbjct: 171 GKNTIGFYLHNMKAVYRRGC-LELNLVFPSPFCNIRIRSEKTVKQSLPMKQVKSLAN--- 226

Query: 126 KQLCQDNKELQRTRGLFFLMFLLRGIPFVDLAYLKKHDIDGNVMTYRRRKTGRLLTVTLV 185
             L     E    R +F      RG+ FVD+A+LKK DI   V+ YRR+KTG+LL + + 
Sbjct: 227 LSLSVGTPECL-ARDVFMFSIYTRGMSFVDIAFLKKSDIFPGVIRYRRQKTGQLLEIGIN 285

Query: 186 PEAMKLIKRYMNTDPASPYLFSLITSGEGTEAAYKEYQLALRNFNYQL 233
            +   L++RY   D +  YLF L+   + +E  Y  Y+ A     Y L
Sbjct: 286 RQIQNLLERY--GDTSGDYLFPLV---DESETPYSGYKKAYNRMRYAL 328