Pairwise Alignments

Query, 409 a.a., transposase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 430 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  202 bits (513), Expect = 2e-56
 Identities = 128/421 (30%), Positives = 213/421 (50%), Gaps = 37/421 (8%)

Query: 6   FKVLLYLKKSEPDKTGKAPIMGRITLNRTMAQFSCKLSCTPGLWNARESRLNGKSREAVE 65
           F +   +++++ D+ G  PI  RIT++    + S K   +P LW+    +  G + E+  
Sbjct: 7   FGIQFIIRQNKLDENGMTPIRARITVDGKRVELSVKKKISPSLWDHGRGKAKGNNPESRT 66

Query: 66  TNEKIERLLLAVHSAFNSLMERKRDFDAAAVRDMFQGNAGMQMTLLKLLDRHNGEMKARV 125
            N  ++ +   V      L   K+      V++ F G    + TL++L+D HN +    +
Sbjct: 67  FNRFLDHIRARVLECHQELYIEKKTITPETVKNRFLGIEEQEHTLMELVDFHNTQ---NM 123

Query: 126 GVDRAPTTLSTYLFTYRTLSEFIKAKFKVPDLVFGQLNEQFIRDYQDFILLEKG------ 179
           GV  +  TL  Y  T R L EF+K   +  D+    ++ +FI DY+  +   K       
Sbjct: 124 GV-LSEGTLKNYRTTERHLLEFLKTXKRKSDIPLSDIDYKFITDYEHHLRTFKPKDHRRR 182

Query: 180 -YAVDTLRGYLAILKKICRIAYKEGHSEKYHFCHFKLP--------------------KQ 218
             A + +  +L  LKK+  +A+K    +K  F ++K                      + 
Sbjct: 183 PVANNGVMKHLIRLKKLMTLAFKMEWIKKDPFLNYKFRYNLAFKMEWIKKDPFLNYKFRY 242

Query: 219 KETTPKALSRENFEKLRDLEIPEKRRSHVITRDLFLFACYTGTAYADAVSITRKNLFRDD 278
           K+   + L  E   ++   E    R   V  RDLF+F+CYTG +Y D+ ++T+ N+ +  
Sbjct: 243 KKVQRQFLEMEELSRIESKEFTIARLDWV--RDLFVFSCYTGLSYIDSTNLTQANIGKGI 300

Query: 279 EGSLWLKYQRKKTDYLGRVKLLPEAVALIEKYRDDTRE----TLFPPQDYHTLRANMKSL 334
           +G LWL  +RKKTD   ++ LLP+A+ +++KY+D  +     TL PP     + + +K +
Sbjct: 301 DGDLWLISKRKKTDEPVKLPLLPKAIEILDKYKDHPKAKANGTLLPPISNQKMNSYLKEI 360

Query: 335 RLMAGLSQDLVYHMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFED 394
             +  +++ L +H  RH+FA+ VTL  GVPIET+ KMLGH+ I TTQIY+RV  KK+ ED
Sbjct: 361 ADLCDITKTLTHHTARHTFATTVTLMNGVPIETVSKMLGHTKIATTQIYSRVVEKKISED 420

Query: 395 M 395
           M
Sbjct: 421 M 421