Pairwise Alignments

Query, 285 a.a., transcriptional regulator, AraC-type (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 295 a.a., MDR efflux pump AcrAB transcriptional activator RobA from Pectobacterium carotovorum WPP14

 Score = 73.9 bits (180), Expect = 4e-18
 Identities = 66/282 (23%), Positives = 122/282 (43%), Gaps = 18/282 (6%)

Query: 18  VVEYINQHLGEDIDLKSLARISNFSPFYFHRIMKAFLGEPIGTFIVRTRTEAAARLLRYS 77
           ++ ++  HL + + L ++A  + +S ++  R+ K   G  IG++I   R   AA  L  +
Sbjct: 10  LLNWLESHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGSYIRARRLTKAAVALCLT 69

Query: 78  DIPIADIAYRIGYSSPSSLSKVFRQFYGISPLEYRNNKNFVIMKPAIIRPDLEL------ 131
             PI DIA +  + S  + ++ F++ +  +P  YR + N+       +RP + L      
Sbjct: 70  SRPILDIALQYRFDSQQTFTRAFKKQFTQTPASYRRSDNWNTFG---LRPPIRLGAFTLP 126

Query: 132 KSEIKSIPARNVIYIRLSGDYKLNDYGGTWGRLWQFIKEQKLPMGDFSPLCIY---HDDP 188
           + +  ++P   ++ +  + + +L         +      Q L      P  +Y   H  P
Sbjct: 127 QPQFITLPETQLLGLTQTYNCRLEQICNFRTEIRVHYWRQFLGETCSVPPVLYGLHHSRP 186

Query: 189 KVTPAEKLRTDVCMVMPVQVAPKGDVGF---KTLPAGRYAIFLYKGTYDNLQAVYDTIYG 245
                ++        +  Q  P  DV      TLP G YA+F+++G  D LQ    ++Y 
Sbjct: 187 SKEKDDEHEVLYTTALEPQYLP-DDVHTGEPVTLPGGDYAMFVFEGPNDELQDFIISLYD 245

Query: 246 KCLPEMECTLRDEPSAERYLNNPCETA--PEELLTEIYIPVE 285
            CLP  + T R    AER+  N       P  +  E +IP++
Sbjct: 246 TCLPTFQLTRRKGFDAERFHPNRDTDGEIPAIIRCEYFIPIQ 287