Pairwise Alignments
Query, 272 a.a., TPR-repeat-containing protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482
Subject, 676 a.a., tetratricopeptide repeat domain protein from Bacteroides ovatus ATCC 8483
Score = 62.4 bits (150), Expect = 3e-14
Identities = 60/259 (23%), Positives = 105/259 (40%), Gaps = 40/259 (15%)
Query: 1 MIRIILILFLSFPVALCAQTYQQLSEKAIEYIEMDSLSKAEELLLQALKLEPKNAKNAML 60
M++ IL + L FP +CAQ I D + A+NA+
Sbjct: 1 MVKRILTVLLLFPTLVCAQ------------INTDRVMTI--------------ARNALY 34
Query: 61 FSNLGLVQRRLGEYDKALESYSFALNFAPLAVPILLDRAAINLEMGNTDRAYTDYCQVLD 120
F +Y +++ ++ +N P RA L + + A D +
Sbjct: 35 FE----------DYVLSIQYFNQVINAKPYLYEPYFFRALAKLNLEDFQGAEADCDAAIQ 84
Query: 121 EDKQNKEALLMRAYIYVLRRDYPAARIDYNRLLEIDPQSYS--GRLGLATLEQKEGKFKE 178
+ A +R + + + A DY + L DP++ + L L+ +++K+ +
Sbjct: 85 RNPFVVGAYQIRGLARIRQNKFDGAIEDYKKALHYDPENITLWHNLTLSHIQKKD--YDA 142
Query: 179 ALEILNKMITATPEDATLYIARADVEREMKHEDLALVDLEEAIRLNPSSADAYLLRGNIY 238
A E L ++ +P Y+ R +V + K AL D +A+ L+ DA+ R +
Sbjct: 143 AKEDLESLLKVSPRYTRAYLMRGEVSLQQKDTIAALNDFNKALELDKYDPDAWAARAIVK 202
Query: 239 LTQKKKALAKMDFEKAISL 257
L Q K A A+ DF +AI L
Sbjct: 203 LQQAKYAEAEADFNRAIPL 221
Score = 62.0 bits (149), Expect = 3e-14
Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 2/189 (1%)
Query: 65 GLVQRRLGEYDKALESYSFALNFAPLAVPILLDRAAINLEMGNTDRAYTDYCQVLDEDKQ 124
GL + R ++D A+E Y AL++ P + + + +++ + D A D +L +
Sbjct: 97 GLARIRQNKFDGAIEDYKKALHYDPENITLWHNLTLSHIQKKDYDAAKEDLESLLKVSPR 156
Query: 125 NKEALLMRAYIYVLRRDYPAARIDYNRLLEIDPQSYSGRLGLATLEQKEGKFKEALEILN 184
A LMR + + ++D AA D+N+ LE+D A ++ ++ K+ EA N
Sbjct: 157 YTRAYLMRGEVSLQQKDTIAALNDFNKALELDKYDPDAWAARAIVKLQQAKYAEAEADFN 216
Query: 185 KMITATPEDATLYIARADVEREMKHEDLALVDLEEAIRLNPSSADAYLLRG--NIYLTQK 242
+ I + ++A YI RA + A+ D + A+ ++P++ + RG +
Sbjct: 217 RAIPLSAKNAGNYINRALARFHQNNLRGAMSDYDLALDIDPNNFIGHYNRGLLRAQVGDD 276
Query: 243 KKALAKMDF 251
+A+ DF
Sbjct: 277 NRAIEDFDF 285
Score = 54.3 bits (129), Expect = 7e-12
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 26/168 (15%)
Query: 121 EDKQNKEALLMRAYIYVLRRDYPAARIDYNRLLEIDPQSYSGRLGLATLEQKEGKFKEAL 180
ED +N RA + L +D+ +A D + + +D + A + K+ ++++A
Sbjct: 497 EDDKNASKRFARAIDFYLVQDFSSAVSDLTQTILLDGDFFPAYFMRALIRCKQLEYQKAE 556
Query: 181 EI--------------------------LNKMITATPEDATLYIARADVEREMKHEDLAL 214
+ L+K+I P+ Y RA+V +K A+
Sbjct: 557 QAVETDVVPGDNKRKEITAVDYEVVRKDLDKVINLAPDFVYAYYNRANVSAMLKDYRAAI 616
Query: 215 VDLEEAIRLNPSSADAYLLRGNIYLTQKKKALAKMDFEKAISLGIPPA 262
+D ++AI LNP ADAY RG ++ L D KA LGI A
Sbjct: 617 IDYDKAIELNPDFADAYFNRGLTHIFLGNNKLGISDLSKAGELGIVSA 664
Score = 50.8 bits (120), Expect = 8e-11
Identities = 52/242 (21%), Positives = 88/242 (36%), Gaps = 37/242 (15%)
Query: 27 KAIEYIEMDSLSKAEELLLQALKLEPKNAKNAMLFSNLGLVQRRLGEYDKALESYSFALN 86
+ + I + A E +AL +P+N L+ NL L + +YD A E L
Sbjct: 96 RGLARIRQNKFDGAIEDYKKALHYDPENIT---LWHNLTLSHIQKKDYDAAKEDLESLLK 152
Query: 87 FAPLAVPILLDRAAINLEMGNTDRAYTDYCQVLDEDKQNKEALLMRAYIYVLRRDYPAAR 146
+P L R ++L+ +T A D+ + L+ DK + +A RA + + + Y A
Sbjct: 153 VSPRYTRAYLMRGEVSLQQKDTIAALNDFNKALELDKYDPDAWAARAIVKLQQAKYAEAE 212
Query: 147 IDYNRL----------------------------------LEIDPQSYSGRLGLATLEQK 172
D+NR L+IDP ++ G L +
Sbjct: 213 ADFNRAIPLSAKNAGNYINRALARFHQNNLRGAMSDYDLALDIDPNNFIGHYNRGLLRAQ 272
Query: 173 EGKFKEALEILNKMITATPEDATLYIARADVEREMKHEDLALVDLEEAIRLNPSSADAYL 232
G A+E + +I P++ R + + A+ D I P+ Y
Sbjct: 273 VGDDNRAIEDFDFVIKMEPDNMMAVFNRGLLRAQTGDYRGAIQDYTTVINQYPNFLAGYY 332
Query: 233 LR 234
R
Sbjct: 333 QR 334
Score = 43.9 bits (102), Expect = 9e-09
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 3/153 (1%)
Query: 27 KAIEYIEMDSLSKAEELLLQALKLEPKNAKNAMLFSNLGLVQRRLGEYDKALESYSFALN 86
+AI ++ ++AE +A+ L KNA N + N L + A+ Y AL+
Sbjct: 198 RAIVKLQQAKYAEAEADFNRAIPLSAKNAGN---YINRALARFHQNNLRGAMSDYDLALD 254
Query: 87 FAPLAVPILLDRAAINLEMGNTDRAYTDYCQVLDEDKQNKEALLMRAYIYVLRRDYPAAR 146
P +R + ++G+ +RA D+ V+ + N A+ R + DY A
Sbjct: 255 IDPNNFIGHYNRGLLRAQVGDDNRAIEDFDFVIKMEPDNMMAVFNRGLLRAQTGDYRGAI 314
Query: 147 IDYNRLLEIDPQSYSGRLGLATLEQKEGKFKEA 179
DY ++ P +G + +K G K A
Sbjct: 315 QDYTTVINQYPNFLAGYYQRSEARRKIGDKKGA 347
Score = 33.5 bits (75), Expect = 1e-05
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 48 LKLEPKNAKNAMLFSNLGLVQRRLGEYDKALESYSFALNFAPLAVPILLDRAAINLEMGN 107
+K+EP N M N GL++ + G+Y A++ Y+ +N P + R+ ++G+
Sbjct: 287 IKMEPDNM---MAVFNRGLLRAQTGDYRGAIQDYTTVINQYPNFLAGYYQRSEARRKIGD 343
Query: 108 TDRAYTDYCQVLDE--DKQN 125
A D +V+ DKQN
Sbjct: 344 KKGAEQDEFKVMKAQIDKQN 363