Pairwise Alignments

Query, 182 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 185 a.a., RNA polymerase subunit sigma-70 from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 73.2 bits (178), Expect = 3e-18
 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 8/179 (4%)

Query: 6   ESYYIERILDGETEYFSVFLDRYSRPLYTLVVQIVGCPEDAEELLQDIFLKAFRNLNRY- 64
           E   + R+  G+T+  S+  D YS  L+ +V+QIV   E AE++LQ+ F+K + +   Y 
Sbjct: 11  EEELVARLRSGDTKAVSLLYDMYSATLFGVVLQIVKVEETAEDVLQEAFVKIWNSFQSYD 70

Query: 65  KGECRFSTWIYRIAYNAAISATRKKKQEF-LYIEENTINNVPDEMADNVLAPAETEEQLE 123
             + R  TW+  I  N AI   R K+    L   E   +   D  ADN       + +  
Sbjct: 71  ASKGRLFTWMINICRNLAIDKIRSKQHRVSLQTREIPASPRADMGADNF------KPEHI 124

Query: 124 RLEMAIDQLSGEEKALITLFYYEEKSMEEIGEVLKLSISNVKVRLHRTRKKICVLMNNK 182
            L    + LS E+K +I L Y+E  +  EI E  ++ +  VK R     + +  L   +
Sbjct: 125 GLREITETLSPEQKQIIDLMYFEGMTQSEIAEEYQIPLGTVKTRARSAIRTLVKLFKGR 183