Pairwise Alignments

Query, 182 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 188 a.a., RNA polymerase sigma factor, sigma-70 family from Kangiella aquimarina DSM 16071

 Score = 80.5 bits (197), Expect = 2e-20
 Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 7/169 (4%)

Query: 10  IERILDGETEYFSVFLDRYSRPLYTLVVQIVGCPEDAEELLQDIFLKAFRNLNRYKGECR 69
           I++ L G+   F+     Y +P+Y+L  +++   + + ++LQ +FLK    L+      +
Sbjct: 12  IKKALAGDKFAFAQIYSTYKQPVYSLAFRMLQDVDASSDILQQVFLKVMTRLDDINDHRK 71

Query: 70  FSTWIYRIAYNAAISATRKKKQEFLYIEENTINNVPDEMADNVLAPAETEEQLERLEMAI 129
             +WI RI YN  I   R   +E L + +       D  AD+ LAP         L++ +
Sbjct: 72  LGSWIKRITYNCVIDYIRANSRESLGVND-------DYFADDFLAPQHNSFDDYDLDILL 124

Query: 130 DQLSGEEKALITLFYYEEKSMEEIGEVLKLSISNVKVRLHRTRKKICVL 178
           + L+  E++++ LF  EE + +EI  +L +S SN K    R  KK+  L
Sbjct: 125 ETLNARERSVLILFSIEEYTHQEIASLLSISESNSKQIFSRALKKLSQL 173