Pairwise Alignments

Query, 182 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 196 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 88.2 bits (217), Expect = 8e-23
 Identities = 49/177 (27%), Positives = 100/177 (56%), Gaps = 10/177 (5%)

Query: 10  IERIL-DGETEYFSVFLDRYSRPLYTLVVQIVGCPEDAEELLQDIFLKAFRNLNRYKGEC 68
           IE+++ + +++ F +  DRYS  +Y   +  V   ++A++L  DIF+K F  L ++KG+ 
Sbjct: 23  IEQVVKNNDSKLFGILYDRYSNIVYNKCLSFVKSKDEAQDLTHDIFIKLFFQLKKFKGDA 82

Query: 69  RFSTWIYRIAYNAAISAT----RKKKQEFLYIEENTINNVPDEMADNVLAPAETEEQLER 124
           +FSTW+Y   YN  ++      +KKK+ F  +++  + + P E  D+       + Q ER
Sbjct: 83  KFSTWLYSFTYNFCVNYVQRKYQKKKETFQRLDD--LQHHPYEEIDD---SEIYKMQAER 137

Query: 125 LEMAIDQLSGEEKALITLFYYEEKSMEEIGEVLKLSISNVKVRLHRTRKKICVLMNN 181
           L+ ++  L   +K ++ + Y +  S +EI + + +  S VK+R++R ++++  +  N
Sbjct: 138 LQRSLQSLDPNDKMVLLMKYMDGMSHKEIQQSIGVGESAVKMRINRAKQRLLDIYKN 194