Pairwise Alignments

Query, 182 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 158 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 75.1 bits (183), Expect = 6e-19
 Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 12/162 (7%)

Query: 21  FSVFLDRYSRPLYTLVVQIVGCPEDAEELLQDIFLKAFRNLNRYKGECRFSTWIYRIAYN 80
           F   + +Y   +YT+         +  +L QD+ +  ++  + +KGE    TWI+R++ N
Sbjct: 8   FEQVVKQYKNTIYTVCFMFSKDSREVNDLFQDVLVNLWKGFDTFKGESNIGTWIWRVSLN 67

Query: 81  AAISATRKKKQEFLYIEENTINNVPDEMADNVLAPA-ETEEQLERLEMAIDQLSGEEKAL 139
             IS+ RKKK          I +VP  M  ++     E   Q++ L   I +L   ++A+
Sbjct: 68  TCISSDRKKK----------IVSVPLIMGIDLFEDRDEDTTQIKMLYNRISRLKHFDRAI 117

Query: 140 ITLFYYEEKSMEEIGEVLKLSISNVKVRLHRTRKKICVLMNN 181
           + L + E  S EEI  ++ +S+ NV VRL R ++++  + NN
Sbjct: 118 V-LLWLENFSYEEIAAIVGISVKNVSVRLFRIKEELKKMSNN 158