Pairwise Alignments

Query, 315 a.a., integrase protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 316 a.a., site-specific recombinase IntIA (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  211 bits (536), Expect = 2e-59
 Identities = 114/289 (39%), Positives = 175/289 (60%), Gaps = 11/289 (3%)

Query: 15  LRESGNYGTAHIYRSSLSAILAFHGSDKLPFRKVSQEFLKSFESYLRGRNCSWNTVSTYM 74
           L+E G Y TAH+Y++++ +   FHGS  + F ++++E L+ +  YL       NT+STYM
Sbjct: 21  LQEEGRYSTAHVYKNAVLSFTRFHGSTYIAFEQITRESLRRYGQYLYDCKLKLNTISTYM 80

Query: 75  RTLRAVYNRAVDRHLAPYVPHHFRYVYTGTRADRKRALDKEDMERLMKELPKQLCQDNKE 134
           R LR +YNR V+  +A ++P  FR VYTG    +K+A+  +++  L+ + P+     +K 
Sbjct: 81  RMLRCIYNRGVEAGIARFIPRLFRDVYTGVDVRQKKAMPVKELHTLLYKTPQ-----SKH 135

Query: 135 LQRTRGLFFLMFLLRGIPFVDLAYLKKHDIDGNVMTYRRRKTGRLLTVTLVPEAMKLIKR 194
           L+RT+ +  LMF   G+PF D A+L+K  +   V+ Y R KTG  +++ ++  ++  I +
Sbjct: 136 LRRTQEIARLMFQFCGMPFADFAHLEKSALAQGVLRYNRIKTGTSVSLEVLESSLPTISK 195

Query: 195 YMNTDP----ASPYLFSLITSGEGT--EAAYKEYQLALRNFNYQLMILKQVLGLTSEVSS 248
             N DP     + YLFS++   +    E+ YKEYQ ALR FN QL  L + L L S V+S
Sbjct: 196 LRNNDPVREDGTNYLFSILRGNKSPKGESMYKEYQSALRRFNNQLKSLSRELHLKSAVTS 255

Query: 249 YTARHTWATMAYYCEVHPGVISEAMGHSSITVTETYLKPFKNKKIDEAN 297
           YT RH+WAT A Y  +   +ISE++GH SI  T+ YLK F+ +K  EAN
Sbjct: 256 YTIRHSWATNAKYQGIPIEMISESLGHKSIKTTQIYLKGFELEKRTEAN 304