Pairwise Alignments

Query, 315 a.a., integrase protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 422 a.a., transposase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 62.0 bits (149), Expect = 2e-14
 Identities = 77/313 (24%), Positives = 136/313 (43%), Gaps = 56/313 (17%)

Query: 27  YRSSLSAILAFHGSDKLPFRKVSQEFLKSFESYLRG--------------RNCSWNTVST 72
           Y ++++A++ F G ++L    ++ +FL+ F+++L G              R  S  T+S 
Sbjct: 122 YTTAINALVRFVGKEELDINLITLDFLEQFKAFLIGERDARTKKLMQQGKRVTSNRTLSL 181

Query: 73  YMRTLRAVYNRAVDRH--------LAPYVPHHFRYVYTGTRADRKRALDKEDMERLMKEL 124
           Y+ +++ ++N A  +         L P  P    +      A RKRA+  + ++++ K  
Sbjct: 182 YLVSIKKLFNEAKRKFNKKDKNLILIPNSPFE-DFKIPKQEATRKRAIPADIIKKVWKLP 240

Query: 125 PKQLCQDNKELQR---TRGLFFLMFLLRGIPFVDLAYLKKHDIDGNVMTYRRRKT----- 176
            K + +  K   R    +  F L F L GI   DL    K  + GN + Y R KT     
Sbjct: 241 YKDMKKGYKSTCRYNLAKDCFILSFCLIGINSADLYNATK--MRGNTIIYNRTKTKARRL 298

Query: 177 -GRLLTVTLVPEAMKLIKRYMNTDPASPYLFSLITSGEGTEAAYKEYQLALRNFNYQLMI 235
            G  + V +      LI +Y   D     LF+           + +Y    + FN  +  
Sbjct: 299 DGAKMMVDIPKIVQPLIDKYK--DSTGKRLFN-----------FYQYYGDEKTFNKAINS 345

Query: 236 LKQVLGLTSEVSS---YTARHTWATMAY-YCEVHPGVISEAMGH--SSITVTETYL-KPF 288
             + +G   EV     Y ARH+WAT+A     +   ++  A+ H   S+ VT+ Y+ + F
Sbjct: 346 GLKEIGSILEVDDLEYYAARHSWATIALNKVGIDKYIVHAALNHIDDSMKVTDIYIERDF 405

Query: 289 KNKKIDEANVAVI 301
            N+  ++AN  V+
Sbjct: 406 VNE--NKANAKVV 416