Pairwise Alignments

Query, 315 a.a., integrase protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 312 a.a., transposase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  407 bits (1045), Expect = e-118
 Identities = 199/306 (65%), Positives = 247/306 (80%), Gaps = 1/306 (0%)

Query: 1   MGNLISFMKEVADGLRESGNYGTAHIYRSSLSAILAFHGSDKLPFRKVSQEFLKSFESYL 60
           MGNLISF K+VADGLR  GN+GTAH+YRS+L+ +  FHGS  L F +V+ E+LK FE YL
Sbjct: 1   MGNLISFFKKVADGLRAEGNFGTAHVYRSTLNIVTTFHGSRYLDFHQVNPEWLKDFEVYL 60

Query: 61  RGRNCSWNTVSTYMRTLRAVYNRAVDRHLAPYVPHHFRYVYTGTRADRKRALDKEDMERL 120
           R R  SWNTVSTY+R LRAVYNRAVD   A Y+PH FR VYTGTRADRKRAL+ EDM ++
Sbjct: 61  RSRGSSWNTVSTYLRVLRAVYNRAVDLRKAEYIPHLFRSVYTGTRADRKRALEDEDMRKV 120

Query: 121 MKELPKQLCQDNKELQRTRGLFFLMFLLRGIPFVDLAYLKKHDIDGNVMTYRRRKTGRLL 180
              L K     + +L+RT+ LF LMFLLRG+PFVDLAYL+K D+ GNV+TYRRRKTGR L
Sbjct: 121 FSRLSKSSTIPS-DLRRTKELFILMFLLRGLPFVDLAYLRKSDLRGNVITYRRRKTGRSL 179

Query: 181 TVTLVPEAMKLIKRYMNTDPASPYLFSLITSGEGTEAAYKEYQLALRNFNYQLMILKQVL 240
           +VTL PE+M L++++++ D +SPYLF ++ S EG++ AY+EYQLALR+FN  L +L Q L
Sbjct: 180 SVTLTPESMLLLEKHISRDLSSPYLFPILHSIEGSQEAYREYQLALRSFNQHLELLGQWL 239

Query: 241 GLTSEVSSYTARHTWATMAYYCEVHPGVISEAMGHSSITVTETYLKPFKNKKIDEANVAV 300
           GL S++SSYTARHTWAT AYYCE+HPG+ISEAMGHSSITVTETYLKPF+N+KIDEAN  +
Sbjct: 240 GLESKLSSYTARHTWATTAYYCEIHPGIISEAMGHSSITVTETYLKPFRNRKIDEANNRI 299

Query: 301 ISSLKK 306
           +  +K+
Sbjct: 300 VDFVKR 305