Pairwise Alignments

Query, 923 a.a., excinuclease ABC subunit A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 944 a.a., excinuclease (uvrABC system protein A) from Pseudomonas putida KT2440

 Score =  768 bits (1984), Expect = 0.0
 Identities = 432/945 (45%), Positives = 602/945 (63%), Gaps = 38/945 (4%)

Query: 7   ISIKGARVNNLKNIDVDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSSYARQ 66
           I I+GAR +NLKNID+ +PR+KL+VITGLSGSGKSSLAFDTLYAEGQRRYVESLS+YARQ
Sbjct: 4   ILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63

Query: 67  FLGRMSKPECDFIKGIPPAIAIEQKVNSRNPRSTVGTSTEIYEYLRLLYARVGRTYSPVS 126
           FL  M KP+ D I+G+ PAI+IEQK  S NPRSTVGT TEIY+YLRLLYARVG    P  
Sbjct: 64  FLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDH 123

Query: 127 GEEVKKHSTEDIVNCMLSHPEGTRYTVLTPIRLREDRTLQQQLEIDLK-QGFNRVEVNGE 185
              ++  +   +V+ +L  PEG++  +L P+ +RE +     +  +L+ QGF R  VNG+
Sbjct: 124 DIPLEAQTISQMVDLVLERPEGSKLMLLAPV-VRERKGEHLAVFDELRAQGFVRARVNGK 182

Query: 186 MKRIDEYKPVAGDEVY---LLVDRMAVANTKDAISRLTDSAETAMYEGDGTCMLRFYLPD 242
           +  +DE   +   + +   ++VDR  V    D   RL +S ETA+   DG  ++   + D
Sbjct: 183 LYELDELPKLDKQKKHSIDVVVDRFKVR--ADLQQRLAESFETALKLADGIALVA-PMDD 239

Query: 243 GTTRLYNFSTKFEAD--GITFEEPNDQMFSFNSPIGACPVCEGFGKVIGIDEHLVVPNRS 300
                  FS +F     G    E   ++FSFN+P GACP C+G G     D   +V N  
Sbjct: 240 EQGEETIFSARFACPVCGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDTKRLV-NTE 298

Query: 301 LSVYEGAIVCWRGEKMGEWKDELIHN-ADKFDFPIFTPYYELTDEQRRTLWEGN------ 353
           L++ EGAI  W  ++   +  +++ + A  + F +  P+ EL+ E ++ + +G+      
Sbjct: 299 LTLAEGAIRGW--DRRNVYYFQMLGSLAAHYGFSLEEPFGELSAEHQKVILQGSGKQSVD 356

Query: 354 -QYFHGINDFFKMLE---------ENQYK----IQYRVMLARYRGKTICPKCHGTRLKPE 399
            +Y +   D  K            E +Y+       R  LA++ G   CP C GTRL+ E
Sbjct: 357 FKYLNDRGDIVKRSHPFEGIVPNLERRYRETESATVREELAKFLGTQPCPDCRGTRLRRE 416

Query: 400 AGYVRVDGKSISELVDLPITELKEFFDHLNLNEHDSNVARRILIEINSRIRFLIDVGLGY 459
           A +V V  K++  + +LPI E   +F  L L      +A +IL EI  R++FL++VGL Y
Sbjct: 417 ARHVWVGEKTLPAVTNLPIGEASNYFGQLTLTGRRGEIAAKILKEICERLQFLVNVGLDY 476

Query: 460 LTLNRLSNSLSGGESQRINLATSLGSSLVGSLYILDEPSIGLHSRDTDRLIRVLRQLQEL 519
           LTL+R +++LSGGE+QRI LA+ +G+ LVG +YILDEPSIGLH RD DRL+  L  L++L
Sbjct: 477 LTLDRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLATLNHLRDL 536

Query: 520 GNTVVVVEHDEEIIRAADYIIDIGPNAGRLGGEVVYQGDMKDLKKGSNSHTVRYLLGEEE 579
           GNTV+VVEHDE+ IR ADY++DIGP AG  GG++V +G  +++    +S T +YL G ++
Sbjct: 537 GNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGQIVAEGSPQEVMDHPDSLTGKYLSGRKK 596

Query: 580 IPVPEHRRPWNN--YIELTGARENNLKGVNVKFPLNVMTVVTGVSGSGKSTLVRDIFYRA 637
           I VP  R P N    ++L GAR NNL+ V+++ P+ ++T VTGVSGSGKSTL+ +  Y  
Sbjct: 597 IVVPAKRTPRNKKLQLKLKGARGNNLQNVDLEVPIGLLTCVTGVSGSGKSTLINNTLYPL 656

Query: 638 LKRELDECSDRPGEFSSISGSLRDLRNIEFVDQNPIGKSSRSNPVTYIKAYDEIRKLWAE 697
               L+  S       S    L+ L  +  +DQ+PIG++ RSNP TY   +  IR+L++ 
Sbjct: 657 AATALNGASSLEAAPHSSMDGLQHLDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFSG 716

Query: 698 QPLAKQMGYTAGHFSFNSEGGRCEECKGEGTITVEMQFMADLVLECESCHGKRFKADTLE 757
            P ++  GY  G FSFN +GGRCE C+G+G I VEM F+ D+ + C+ C  KR+  +TLE
Sbjct: 717 VPESRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLE 776

Query: 758 VKFQDKNIYDVLEMTVNQAVEFFTEHGQKKIVKRLLPLQDVGLGYIKLGQSSSTLSGGEN 817
           +K++ KNI++VLEMT+  A EFF       + ++L  L DVGL YIKLGQS++TLSGGE 
Sbjct: 777 IKYKGKNIHEVLEMTIEDAREFF--DAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEA 834

Query: 818 QRVKLAFYLSQEKADPTLFIFDEPTTGLHFHDIRKLLDAFDALIRRGHSIVIIEHNMDVI 877
           QRVKL+  LS+     TL+I DEPTTGLHF DI++LLD    L   G+++V+IEHN+DVI
Sbjct: 835 QRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVI 894

Query: 878 KCADYVIDLGPEGGDKGGNIVAVGTPEEVAACGASYTGQFLKEKL 922
           K AD+++DLGPEGG KGG I+A GTPEE++    SYTG +LK  L
Sbjct: 895 KTADWLVDLGPEGGSKGGQIIACGTPEELSEMKQSYTGHYLKPLL 939