Pairwise Alignments

Query, 923 a.a., excinuclease ABC subunit A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 947 a.a., excinuclease ABC subunit UvrA from Magnetospirillum magneticum AMB-1

 Score =  829 bits (2141), Expect = 0.0
 Identities = 457/941 (48%), Positives = 607/941 (64%), Gaps = 39/941 (4%)

Query: 7   ISIKGARVNNLKNIDVDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSSYARQ 66
           I ++GAR +NLKNIDVD+PR+KLVVITGLSGSGKSSLAFDT+YAEGQRRYVESLS+YARQ
Sbjct: 5   IRVRGAREHNLKNIDVDLPRDKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 64

Query: 67  FLGRMSKPECDFIKGIPPAIAIEQKVNSRNPRSTVGTSTEIYEYLRLLYARVGRTYSPVS 126
           FL  M KP+ + I+G+ PAI+IEQK  S+NPRSTVGT TEIY+Y+RLL+ARVG  +SP +
Sbjct: 65  FLELMQKPDVESIEGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARVGVPHSPAT 124

Query: 127 GEEVKKHSTEDIVNCMLSHPEGTRYTVLTP-IRLREDRTLQQQLEIDLKQGFNRVEVNGE 185
           G  ++  +   +V+ + +  EGTR  +L P +R R+    +  +E+  K+GF RV+V+G 
Sbjct: 125 GLPIESQTVSQMVDRVETMAEGTRLYLLAPFVRGRKGEYRKDLIELQ-KKGFQRVKVDGT 183

Query: 186 MKRIDEYKPV---AGDEVYLLVDRMAVANTKDAI-SRLTDSAETAMYEGDGTCMLRFYLP 241
           +  IDE   +      ++ ++VDR+ V   K  + +RL DS ETA+   DG  +      
Sbjct: 184 LYEIDEVPQLDKKKKHDIEVVVDRLVV---KPGLGNRLADSIETALSLADGLAIAE---N 237

Query: 242 DGTTRLYNFSTKFEA--DGITFEEPNDQMFSFNSPIGACPVCEGFGKVIGIDEHLVVPNR 299
             T     FS KF     G T EE   ++FSFN+P GACP C+G G  +  D  LV+PN 
Sbjct: 238 AETGERTVFSAKFACPVSGFTIEEIEPRLFSFNNPFGACPACDGLGVKLYFDPELVIPNP 297

Query: 300 SLSVYEGAIVCWRGEKMGEWKDELIHNADKFDFPIFTPYYELTDEQRRTLWEGN------ 353
            LS+ EGAI  W G     +   L   A+ + F + TP+ +L +  R  +  G+      
Sbjct: 298 GLSLREGAIAPWAGSTSQYYVQTLQGLAEHYRFKLDTPWEKLPERAREVILHGSGNEEIR 357

Query: 354 -------------QYFHGINDFFKMLEENQYKIQYRVMLARYRGKTICPKCHGTRLKPEA 400
                        + F G+                R  L+R++G   C  C G RLKPEA
Sbjct: 358 IAYEDGFRGYHTEKSFEGVIPNMARRYRETDSSYIREDLSRFQGTAPCETCGGARLKPEA 417

Query: 401 GYVRVDGKSISELVDLPITELKEFFD--HLNLNEHDSNVARRILIEINSRIRFLIDVGLG 458
             V+V G  ISE  +  I   +++F   H +L   D  +ARRIL EIN R+ FL+DVGL 
Sbjct: 418 LAVKVRGLHISEATEFSILNARDWFADLHNHLRPKDQEIARRILREINDRLGFLVDVGLE 477

Query: 459 YLTLNRLSNSLSGGESQRINLATSLGSSLVGSLYILDEPSIGLHSRDTDRLIRVLRQLQE 518
           YLT+ R S SLSGGESQRI LA+ +GS L G LY+LDEPSIGLH RD DRL+  LR+L++
Sbjct: 478 YLTMGRGSGSLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLATLRRLRD 537

Query: 519 LGNTVVVVEHDEEIIRAADYIIDIGPNAGRLGGEVVYQGDMKDLKKGSNSHTVRYLLGEE 578
           +GNTV+VVEHDE+ IR+ADY++D+GP AG  GG+VV +G    +    NS T RYL G++
Sbjct: 538 IGNTVIVVEHDEDAIRSADYLVDMGPGAGIHGGQVVSEGTPAQVMADPNSMTGRYLTGQD 597

Query: 579 EIPVPEHRRPWN-NYIELTGARENNLKGVNVKFPLNVMTVVTGVSGSGKSTLVRDIFYRA 637
            IP+P  RRP N   + L GAR NNLK V+   PL  +T VTGVSG GKSTLV +  Y+A
Sbjct: 598 HIPLPALRRPGNGKRLSLIGARGNNLKNVDAHIPLGTLTCVTGVSGGGKSTLVIETLYKA 657

Query: 638 LKRELDECSDRPGEFSSISGSLRDLRNIEFVDQNPIGKSSRSNPVTYIKAYDEIRKLWAE 697
           L R L    ++P  F  I G +  L  I  +DQ+PIG++ RSNP TY  A+  IR  + E
Sbjct: 658 LSRRLMGAREQPSPFDRIDG-MEYLDKIIDIDQSPIGRTPRSNPATYTGAFSPIRDWFTE 716

Query: 698 QPLAKQMGYTAGHFSFNSEGGRCEECKGEGTITVEMQFMADLVLECESCHGKRFKADTLE 757
            P +K  GY  G FSFN +GGRCE C+G+G I +EM F+ D+ ++C+ C GKR+  +TLE
Sbjct: 717 LPESKVRGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVQCDVCKGKRYNRETLE 776

Query: 758 VKFQDKNIYDVLEMTVNQAVEFFTEHGQKKIVKRLLPLQDVGLGYIKLGQSSSTLSGGEN 817
           + F+ K+I DVL+MTV +A +FF       I  +++ LQ VGL YI LGQ ++TLSGGE 
Sbjct: 777 ITFRGKSIADVLDMTVEEAADFF--KAVPAIRDKMVTLQRVGLDYIHLGQQATTLSGGEA 834

Query: 818 QRVKLAFYLSQEKADPTLFIFDEPTTGLHFHDIRKLLDAFDALIRRGHSIVIIEHNMDVI 877
           QRVKLA  LS+     TL+I DEPTTGLHF D+RKLL+   AL+  G+++++IEHN++VI
Sbjct: 835 QRVKLAKELSKRSTGRTLYILDEPTTGLHFEDVRKLLEVIQALVDAGNTVLVIEHNLEVI 894

Query: 878 KCADYVIDLGPEGGDKGGNIVAVGTPEEVAACGASYTGQFL 918
           K AD+++DLGPEGGD GG IVA GTPE+VAAC  SYTG +L
Sbjct: 895 KTADWIVDLGPEGGDGGGRIVAAGTPEDVAACRESYTGHYL 935



 Score = 63.9 bits (154), Expect = 5e-14
 Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 15/112 (13%)

Query: 5   KHISIKGARVNNLKNIDVDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSSYA 64
           K +S+ GAR NNLKN+D  IP   L  +TG+SG GKS+L  +TLY            + +
Sbjct: 611 KRLSLIGARGNNLKNVDAHIPLGTLTCVTGVSGGGKSTLVIETLY-----------KALS 659

Query: 65  RQFLGRMSKP----ECDFIKGIPPAIAIEQKVNSRNPRSTVGTSTEIYEYLR 112
           R+ +G   +P      D ++ +   I I+Q    R PRS   T T  +  +R
Sbjct: 660 RRLMGAREQPSPFDRIDGMEYLDKIIDIDQSPIGRTPRSNPATYTGAFSPIR 711



 Score = 63.2 bits (152), Expect = 8e-14
 Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 6/113 (5%)

Query: 590 NNYIELTGARENNLKGVNVKFPLNVMTVVTGVSGSGKSTLVRDIFY-RALKRELDECSDR 648
           + +I + GARE+NLK ++V  P + + V+TG+SGSGKS+L  D  Y    +R ++  S  
Sbjct: 2   SGFIRVRGAREHNLKNIDVDLPRDKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAY 61

Query: 649 PGEFSSIS-----GSLRDLRNIEFVDQNPIGKSSRSNPVTYIKAYDEIRKLWA 696
             +F  +       S+  L     ++Q    K+ RS   T  + YD +R LWA
Sbjct: 62  ARQFLELMQKPDVESIEGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWA 114