Pairwise Alignments
Query, 923 a.a., excinuclease ABC subunit A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482
Subject, 943 a.a., excinuclease ABC subunit UvrA from Dickeya dadantii 3937
Score = 750 bits (1937), Expect = 0.0
Identities = 426/942 (45%), Positives = 590/942 (62%), Gaps = 37/942 (3%)
Query: 7 ISIKGARVNNLKNIDVDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSSYARQ 66
I I+GAR +NLKNI++ IPR+KL+V+TGLSGSGKSSLAFDTLYAEGQRRYVESLS+YARQ
Sbjct: 4 IEIRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
Query: 67 FLGRMSKPECDFIKGIPPAIAIEQKVNSRNPRSTVGTSTEIYEYLRLLYARVGRTYSPVS 126
FL M KP+ D I+G+ PAI+IEQK S NPRSTVGT TEI++YLRLL+ARVG P
Sbjct: 64 FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPEH 123
Query: 127 GEEVKKHSTEDIVNCMLSHPEGTRYTVLTPIRLREDRTLQQQLEIDLKQGFNRVEVNGEM 186
+ + +V+ +LS PEG R +L PI + LE QG+ R ++GE+
Sbjct: 124 DIPLDAQTVSQMVDNVLSQPEGKRLMLLAPIVKERKGEHTKTLENLATQGYIRARIDGEV 183
Query: 187 KRIDEYKPVAGDE---VYLLVDRMAVANTKDAISRLTDSAETAMYEGDGTCMLRFYLPDG 243
+ + + + + ++VDR V N D RL +S ETA+ GT ++ + D
Sbjct: 184 CDLSDPPKLELQKKHTIEVVVDRFKVRN--DLAQRLAESFETALELSGGTAVVAD-MDDP 240
Query: 244 TTRLYNFSTKFEAD--GITFEEPNDQMFSFNSPIGACPVCEGFGKVIGIDEHLVVPNRSL 301
FS F G + E ++FSFN+P GACP C+G G D VV N L
Sbjct: 241 NAPELVFSANFACPVCGYSMHELEPRLFSFNNPAGACPTCDGLGVQQFFDPARVVQNGEL 300
Query: 302 SVYEGAIVCWRGEKMGEWKDELIHN-ADKFDFPIFTPYYELTDEQRRTLWEG----NQYF 356
S+ GAI W ++ + +++ + AD + F + P+ L+ ++ + G N F
Sbjct: 301 SLAGGAIRGW--DRRNFYYFQMLRSLADHYQFDVEAPFDSLSPAVQKVILYGSGKENIEF 358
Query: 357 HGIND----------FFKMLE--ENQYK----IQYRVMLARYRGKTICPKCHGTRLKPEA 400
IND F +L E +YK R LA++ C C GTRL+ EA
Sbjct: 359 KYINDRGDTSVRRHPFEGVLNNMERRYKETESTAVREELAKFISNRPCASCGGTRLREEA 418
Query: 401 GYVRVDGKSISELVDLPITELKEFFDHLNLNEHDSNVARRILIEINSRIRFLIDVGLGYL 460
+V V+ ++ ++ D+ I EFF ++ L+ + +A ++L EI R+RFL++VGL YL
Sbjct: 419 RHVYVEQTTLPQIADMSIGHAMEFFHNIKLSGQRAKIAEKVLKEIGDRLRFLVNVGLNYL 478
Query: 461 TLNRLSNSLSGGESQRINLATSLGSSLVGSLYILDEPSIGLHSRDTDRLIRVLRQLQELG 520
+L+R + +LSGGE+QRI LA+ +G+ LVG +Y+LDEPSIGLH RD +RL+ L L+ LG
Sbjct: 479 SLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLG 538
Query: 521 NTVVVVEHDEEIIRAADYIIDIGPNAGRLGGEVVYQGDMKDLKKGSNSHTVRYLLGEEEI 580
NTV+VVEHDE+ IRAAD+IIDIGP AG GG+V+ +G + S T ++L G +I
Sbjct: 539 NTVIVVEHDEDAIRAADHIIDIGPGAGVHGGQVIAEGTAAQIMAEPESLTGQFLSGARKI 598
Query: 581 PVPEHRRPWN--NYIELTGARENNLKGVNVKFPLNVMTVVTGVSGSGKSTLVRDIFYRAL 638
+P R P + ++L GAR NNLK V + P+ + T +TGVSGSGKSTL+ D +
Sbjct: 599 EIPAQRIPADPGKVLKLIGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIA 658
Query: 639 KRELDECS-DRPGEFSSISGSLRDLRNIEFVDQNPIGKSSRSNPVTYIKAYDEIRKLWAE 697
+R+L+ + P + I G L + +DQ+PIG++ RSNP TY + IR+L+A
Sbjct: 659 QRQLNGGELNEPAAYRDIQG-LEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPIRELFAG 717
Query: 698 QPLAKQMGYTAGHFSFNSEGGRCEECKGEGTITVEMQFMADLVLECESCHGKRFKADTLE 757
P A+ GY G FSFN GGRCE C+G+G I VEM F+ D+ + C+ C GKR+ +TLE
Sbjct: 718 VPEARSRGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLE 777
Query: 758 VKFQDKNIYDVLEMTVNQAVEFFTEHGQKKIVKRLLPLQDVGLGYIKLGQSSSTLSGGEN 817
+K++ K+I++VLEMT+ +A EFF + ++L L DVGL YI+LGQS++TLSGGE
Sbjct: 778 IKYKGKSIHEVLEMTIEEAREFF--DAIPALARKLQTLIDVGLSYIRLGQSATTLSGGEA 835
Query: 818 QRVKLAFYLSQEKADPTLFIFDEPTTGLHFHDIRKLLDAFDALIRRGHSIVIIEHNMDVI 877
QRVKLA LS+ TL+I DEPTTGLHF DI++LL L +G++IV+IEHN+DVI
Sbjct: 836 QRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRDQGNTIVVIEHNLDVI 895
Query: 878 KCADYVIDLGPEGGDKGGNIVAVGTPEEVAACGASYTGQFLK 919
K AD+++DLGPEGG GG I+ GTPE VA C S+T +FLK
Sbjct: 896 KTADWIVDLGPEGGSGGGEILVSGTPETVAQCEKSHTARFLK 937
Score = 58.5 bits (140), Expect = 2e-12
Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 18/128 (14%)
Query: 5 KHISIKGARVNNLKNIDVDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSSYA 64
K + + GAR NNLK++ + +P ITG+SGSGKS+L DTL+ QR+
Sbjct: 611 KVLKLIGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNG------ 664
Query: 65 RQFLGRMSKP----ECDFIKGIPPAIAIEQKVNSRNPRSTVGTSTEIYEYLRLLYARV-- 118
G +++P + ++ I I+Q R PRS T T ++ +R L+A V
Sbjct: 665 ----GELNEPAAYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPIRELFAGVPE 720
Query: 119 --GRTYSP 124
R Y+P
Sbjct: 721 ARSRGYNP 728