Pairwise Alignments

Query, 350 a.a., periplasmic linker protein, putative multidrug resistance protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 356 a.a., component of multidrug efflux system (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  121 bits (304), Expect = 2e-32
 Identities = 93/355 (26%), Positives = 171/355 (48%), Gaps = 20/355 (5%)

Query: 3   NIYVIALAAILFQGCGQKKEMTVPATRPVKTTIVESRSVI---RKDFSGIVEAVEYVKLA 59
           N  +      L   CG+ ++ T     PV+  + E+  ++    ++FS I +  +  +L+
Sbjct: 5   NFSLCIFCLCLLTSCGKGEKKT---NEPVRVKVAEAEMLVPSAEREFSFIAKPFKETELS 61

Query: 60  FRVSGQIISLPVIEGEKVKKGQLIAAIDPRDIALQYAATKSAYETASAQVERNKRLLSRQ 119
           FRV G I    V  G    +G +IA ID RD  ++    ++ Y  A A+ ER K L  + 
Sbjct: 62  FRVGGPIDHFEVYAGNYYHRGDIIAEIDSRDFRIRKERAEAIYHQAKAEFERIKVLYEKN 121

Query: 120 AISVQEYEISLSNYQKAKSEYELSSNNMRDTKLTAPFDGSIEKRLVENYQRVNSGEGIVQ 179
            +S   YE + ++Y  AK+ YE + N + DTKL APFDG I +  +E YQ V + + +V 
Sbjct: 122 NLSASAYEKARADYTSAKTAYETAVNELEDTKLIAPFDGYIGEVYIEKYQDVKATQSVVS 181

Query: 180 LVNTQNLRIKFTIPDAYLYLLRAKDPRFL-VEFDTFKGHVFKARLEEYLDISTEGTGIPV 238
            ++   L+I+  +     +  +AK+ + + + FD     V+ A++ E +  ST    +  
Sbjct: 182 FIDITQLKIEAYVTQEIAF--QAKEIKEVGIRFDVRPEAVYPAKVVE-VSKSTTRNNLSF 238

Query: 239 SITIDDPSFDRDLYA-VKPGFTCSIRFTADVGPLVQDSWTIIPLSAVFGESDGNNMYVWV 297
            +T   P+   +  A +       +  T+ V P+V    T +      G+      YVW+
Sbjct: 239 LMTALLPNKQGEWPAGISGKMLLDLPATSSV-PMVTVPQTALNHRPTEGD------YVWM 291

Query: 298 VED--NKVHKRKIVVNAPTGEAQVLVSEGLKPGEQIVIAGVYQLVEGESIKSIDK 350
           V+    +V KRK+++       +V V +GL+ G+++ ++ +  L +G  +  I +
Sbjct: 292 VDQTTGQVVKRKVILGELLPNGKVEVKDGLQAGDKVAVSKLRFLSDGMPVDIISQ 346