Pairwise Alignments

Query, 429 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 806 a.a., putative ABC transporter permease (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 78.2 bits (191), Expect = 9e-19
 Identities = 106/426 (24%), Positives = 173/426 (40%), Gaps = 43/426 (10%)

Query: 1   MIKLYFKQAFHLLKENKLLSSISIIGTALAIAMIMVIV--ITLRATIAPFA---PESYRD 55
           MI  Y+  A+  L + K  S I++ G A+ +A  ++I+  +T   +        P  YR 
Sbjct: 1   MIGNYWNSAYRNLMKRKKFSFINVFGLAIGMASALLILTYVTFEFSFDKMHTKYPHIYRV 60

Query: 56  RMLIFRYAGFQYKTNENWQSNGPVSYKTAKACFKEMAAPEAVTITSSFSETMLAAKPAGE 115
           +   FR         +NW S+   S+    A  + +A  E  T   S  +     K  GE
Sbjct: 61  QST-FREGEV---LTDNWASS---SFGYGSAMKENLAGIEDYTRIGSLLQPEQIVK-YGE 112

Query: 116 KV--SCSVLQVDDDFWKVFKFDFLSGYPFDKATFDAGATKAVISEDIARQLFGTSDVVGK 173
                  +   D  F+++F F+ L G   DK T  +   + VI+E IAR+ F   D +GK
Sbjct: 113 LTLRENQIAYADPGFFRLFDFELLKG---DKKTSLSMPGQVVITERIARKYFKEEDPIGK 169

Query: 174 TFLLNHSAYMI-CGVVRPVSKLARYAYAQIWIPLSSTDAFTASWGEYGIMGMVSVYILAK 232
             +     Y I C V   + ++   ++      +S T +      EY        Y+L  
Sbjct: 170 ILIFTGPYYKISCEVTGVMEEMPSNSHIHYNFLISYT-SLPKFIHEYWYKHEAYTYVLL- 227

Query: 233 SQDDFPAIRMEAERLRDRYMEGYPDYELLYRDQ--------PDTYFVAAQRYSANNPPAV 284
              D P    E ER      E Y   E L             D +      Y        
Sbjct: 228 ---DSPEREAEIEREFPVMAEKYKTEEALKNKTWGVDLVPLADIHLTPQLGYEMETK-GN 283

Query: 285 KQAVRQYIITLIILLIVPAVNLSGLTLSRMRKRLSEIGVRKAFGAPRRELMIQVLSENML 344
           + A+   +   I +L +  +N   LT++R  +R  E+GVR+  GA R++L+ Q L E ++
Sbjct: 284 RSAMIALVFAAIAILAIAWINYINLTVARSMERAREVGVRRVVGAFRKQLIHQFLFEALV 343

Query: 345 YSLLG-----GVLGLILSYGATFFLGSMLFSIDFMGNGVTDLRTMCMDLLFDPVVFLLAF 399
            +L+      G++ LIL Y       ++ FS+  M     D   M + L+F   +FL  +
Sbjct: 344 MNLIAFILAVGLIELILPYFNQLVGRTVTFSVWLM-----DYWWMLLVLVFIAGIFLSGY 398

Query: 400 FACFAL 405
           +   AL
Sbjct: 399 YPALAL 404



 Score = 29.3 bits (64), Expect = 5e-04
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 297 ILLIVPAVNLSGLTLSRMRKRLSEIGVRKAFGAPRRELMIQVLSENMLYSLLGGVLGLIL 356
           + + +  + L  L +     R  E+G+RK  GA R  L  Q++    L  L+  V+ L +
Sbjct: 690 LAIFISCLGLWVLVMFSCSTRTKEMGIRKVLGASRWNLFYQLVKGFFLLILIAVVIALPV 749

Query: 357 SY 358
           ++
Sbjct: 750 AW 751