Pairwise Alignments

Query, 336 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 431 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  108 bits (269), Expect = 3e-28
 Identities = 77/305 (25%), Positives = 142/305 (46%), Gaps = 24/305 (7%)

Query: 33  KQVAKGLQMGGNFGTAHVYRSSLNAIIAY------RGKGDFTFNEVTPEWIKGFEIHLRG 86
           +Q  K L++     T H Y +S+ +I  +      R        ++T EW+K FE  +  
Sbjct: 131 QQKIKTLELEKREATKHTYEASVKSIKKFLKANRKRDPKHLFVQDITVEWLKNFEKWMLE 190

Query: 87  RGCSWNTVSTYLRTFRAVYNRAVDCRGAVYVPHLFRSVYTGTRADRKRALDTEDIQKVFT 146
           +G S  TV  YLRT R ++N         + P            ++K+ALD   ++ +F 
Sbjct: 191 KGNSKTTVGYYLRTLRHIFNTIK----TDHYPFGKNGYVIPKGTNKKKALDKHQLKLLFE 246

Query: 147 KLPQSSAVTSDMRRTQELFVLMFLLRGLPFVDLAYLRKSDLHDNVITYRRRKTGRP---- 202
             P++       +R ++ +   +L +G+   D+ YL+  +++ + + + R KT       
Sbjct: 247 GKPENQF----QQRAKDFWFFSYLCKGMNMKDILYLKWKNVNGDFLEFVREKTKDTTDEQ 302

Query: 203 --LSVTLTPEAMAILKRY-MNRDTSSPYLFPLLNSREGTKEAYHEYQLALRNFNRQLMLL 259
             + V L   +  ++K Y +       Y+FP+L+      E     Q   R  N+ +   
Sbjct: 303 IVIRVPLMEHSKKVIKVYGVTSGDREEYVFPILHKEMAEGEKLKAKQNFTRLVNQHMKRY 362

Query: 260 GEMLGLGDKLSSYTARHTWATTAYYCEIHPGVISEAMGHSSITVTETYLKPFRNKKIDEA 319
            E LG+ + +S+YTARH++AT A         + E++GH+ I  T+ Y+K F +   DE+
Sbjct: 363 AEKLGIKENVSTYTARHSFATMAIRNNASIEYVGESLGHADIKTTKAYIKSFLD---DES 419

Query: 320 NKKVV 324
           +KK++
Sbjct: 420 DKKMI 424