Pairwise Alignments

Query, 336 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 245 a.a., site-specific recombinase, phage integrase family from Bacteroides ovatus ATCC 8483

 Score =  165 bits (417), Expect = 1e-45
 Identities = 94/237 (39%), Positives = 135/237 (56%), Gaps = 10/237 (4%)

Query: 98  LRTFRAVYNRAVDCRGAVYVPHLFRSVYTGTRADRKRALDTEDIQKVFTKLPQSSAVTSD 157
           +R  R++YNR V+   A YVP LF  VYTG    +K+AL   ++ K+  + PQS      
Sbjct: 1   MRMLRSIYNRGVEAGSAPYVPRLFHDVYTGVDVRQKKALPAAELHKLLYEDPQSER---- 56

Query: 158 MRRTQELFVLMFLLRGLPFVDLAYLRKSDLHDNVITYRRRKTGRPLSVTLTPEAMAILKR 217
           +RRTQ +  LMF   G+ F DLA+L KS L+ NV+ Y R KT  P+SV +   A  ++ +
Sbjct: 57  LRRTQAIAALMFQFCGMSFADLAHLEKSALNQNVLRYNRIKTKTPMSVEVLNTAKDMINQ 116

Query: 218 YMNRDTSSP----YLFPLL--NSREGTKEAYHEYQLALRNFNRQLMLLGEMLGLGDKLSS 271
             +++ S P    YLF +L  + +   +  Y EYQ ALR FN  L  L   L L   ++S
Sbjct: 117 LRSKENSHPDCPDYLFDILRGDKKRTDERGYREYQSALRRFNNSLKDLARALHLQSPVTS 176

Query: 272 YTARHTWATTAYYCEIHPGVISEAMGHSSITVTETYLKPFRNKKIDEANKKVVDFIK 328
           YT RH+WATTA Y  +   +ISE++GH SI  T+ YLK F   +  E NK  + +++
Sbjct: 177 YTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLKGFGLTERTEVNKGNLSYVR 233