Pairwise Alignments

Query, 336 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 437 a.a., site-specific recombinase, phage integrase family from Bacteroides ovatus ATCC 8483

 Score = 62.0 bits (149), Expect = 3e-14
 Identities = 60/255 (23%), Positives = 109/255 (42%), Gaps = 23/255 (9%)

Query: 50  VYRSSLNAIIAYRGKGDFTFNEVTPEWIKGFEIHLRGRGCSWNTVSTYLRTFRAVYNRAV 109
           +Y+ +   ++ Y  KGDF   ++TP  I+ F   L     +  T+  YL   + + N A 
Sbjct: 171 LYKIASERLVKYM-KGDFPLIQLTPIHIQEFAKVLHEENLADTTIRIYLTLIKVILNYAG 229

Query: 110 DCRGAVYVPHLFRSVYTGTRADRKRALDTEDIQKVFTKLPQSSAVTSDMRRTQELFVLMF 169
                 Y  H F          R+  L  ++++++         +   +   +++F+L +
Sbjct: 230 KMNYVSYSIHPFVLFKMPASNVRELDLSIDELKRIL----DVRLLKPSLSMVRDIFMLTY 285

Query: 170 LLRGLPFVDLA---YLRKSDLHDNVITYRRRKTGR-PLSVTLTPEAMAILKRYMNRDTSS 225
            L G+   DL    +  K+D+       R  K G   +  TL PEA  ++ +YM+R+   
Sbjct: 286 YLGGINLRDLLVYDFKNKNDMRYVRHKTRNSKKGENEIVFTLQPEAKVLIDKYMSRNGHL 345

Query: 226 PYLFPLLNSREGTKEAYHE-YQLALRNFNRQLMLLGEMLGLGDKLSSYTARHTWATTAYY 284
            +         G   +Y + Y L  R+ N+    + E+ G+  K++ Y+AR T+A   Y 
Sbjct: 346 QF---------GKYSSYKQIYSLVFRHINK----VTELSGVKKKVTYYSARKTFAQHGYD 392

Query: 285 CEIHPGVISEAMGHS 299
             I    I   +GHS
Sbjct: 393 LGIQIEKIEYCIGHS 407