Pairwise Alignments

Query, 336 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 411 a.a., site-specific recombinase, phage integrase family from Bacteroides ovatus ATCC 8483

 Score = 79.7 bits (195), Expect = 1e-19
 Identities = 71/281 (25%), Positives = 129/281 (45%), Gaps = 47/281 (16%)

Query: 49  HVYRSSLNAIIAYRGKGDFTFNEVTPEWIKGFEIHLRGR-GCSWNTVSTYLRTFRAVYNR 107
           +V +   N+I  +  K D TF+E+TPE+IK F++HL+   G   NT+  Y++ F+ + N 
Sbjct: 139 NVLKKLENSIPTFYDKEDITFHELTPEFIKAFDLHLKTEVGLCRNTIVRYMKCFKKITNM 198

Query: 108 AVDCRGAVYVPHLFRSVYTGTRADRKRA----LDTEDIQKVFTK---LPQSSAVTSDMRR 160
           A+  +G      + +  + G + ++       L  +++Q V  K   +P+ + V      
Sbjct: 199 AL-AKG-----WMKKDAFYGYKMEQDETAPVFLTYDELQTVMNKEFTIPRLALV------ 246

Query: 161 TQELFVLMFLLRGLPFVDLAYLRKSDL-HDN----------VITYRRRKTGRPLSVTLTP 209
            +++F+      GL FVD++ L+K D+  DN          +    RRK     ++ L P
Sbjct: 247 -RDIFIFA-CFTGLAFVDVSTLKKEDMVQDNNGDWWIRKGRIKLMHRRKASSICNIPLLP 304

Query: 210 EAMAILKRYMNRDTSSPYLFPLLNSREGTKEAYHEYQLALRNFNRQLMLLGEMLGLGDKL 269
             +AILK+Y N                  K+ Y       +  N  L  + +  G+   +
Sbjct: 305 VPLAILKKYENNPVC-------------IKKGYCLPVPCNQKMNSYLKEIADFCGIKKNI 351

Query: 270 SSYTARHTWATTAYYCEIHP-GVISEAMGHSSITVTETYLK 309
           +++ ARHT+ TT       P   +S  +GH+S  +T+ Y +
Sbjct: 352 TTHVARHTFGTTITLANNVPLQDVSVMLGHASTRMTQHYAR 392