Pairwise Alignments

Query, 336 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 312 a.a., site-specific recombinase, phage integrase family from Bacteroides ovatus ATCC 8483

 Score =  405 bits (1040), Expect = e-118
 Identities = 195/307 (63%), Positives = 246/307 (80%), Gaps = 1/307 (0%)

Query: 25  MLKVVAFMKQVAKGLQMGGNFGTAHVYRSSLNAIIAYRGKGDFTFNEVTPEWIKGFEIHL 84
           M  +++FMK+VA+GL+  GN+GTAHVYRSS+NAIIA+ G  + +F +V  E++K FE +L
Sbjct: 1   MGNLISFMKEVAEGLRKSGNYGTAHVYRSSMNAIIAFNGSRNLSFKKVNQEFLKSFETYL 60

Query: 85  RGRGCSWNTVSTYLRTFRAVYNRAVDCRGAVYVPHLFRSVYTGTRADRKRALDTEDIQKV 144
           R + CSWNTVSTY+RT RAVYNRAVD R A Y+PH FR VYTGTRADRKRAL+ ED++++
Sbjct: 61  REKDCSWNTVSTYMRTLRAVYNRAVDRRMASYIPHHFRYVYTGTRADRKRALEKEDMERL 120

Query: 145 FTKLP-QSSAVTSDMRRTQELFVLMFLLRGLPFVDLAYLRKSDLHDNVITYRRRKTGRPL 203
             +LP Q      +++RT+  F LMF+LRG+PFVDLAYL+K D+  NV+TYRRRKTGR L
Sbjct: 121 MKELPKQIHQGREELQRTRAYFFLMFMLRGMPFVDLAYLKKQDMVGNVLTYRRRKTGRLL 180

Query: 204 SVTLTPEAMAILKRYMNRDTSSPYLFPLLNSREGTKEAYHEYQLALRNFNRQLMLLGEML 263
           +VTL PE M ++K+YMN D++SPYLFP+L   E T+  Y EYQ+ALRNFN QL+LL ++L
Sbjct: 181 TVTLLPETMKLIKKYMNTDSASPYLFPILTGGESTEATYREYQIALRNFNYQLLLLKQVL 240

Query: 264 GLGDKLSSYTARHTWATTAYYCEIHPGVISEAMGHSSITVTETYLKPFRNKKIDEANKKV 323
            L   LSSYTARHTWAT AYYCEIHPG+ISEAMGHSSI VTETYLKPF+NKKIDEAN  +
Sbjct: 241 ALTSDLSSYTARHTWATMAYYCEIHPGIISEAMGHSSIIVTETYLKPFKNKKIDEANVTI 300

Query: 324 VDFIKRS 330
           +  +KR+
Sbjct: 301 LSSLKRN 307