Pairwise Alignments

Query, 336 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 411 a.a., site-specific recombinase, phage integrase family from Bacteroides ovatus ATCC 8483

 Score =  104 bits (260), Expect = 3e-27
 Identities = 81/278 (29%), Positives = 140/278 (50%), Gaps = 23/278 (8%)

Query: 51  YRSSLNAIIAYRGKGDFTFNEVTPEWIKGFEIHLRGRGCSWNTVSTYLRTFRAVYNRAVD 110
           Y+S+L ++  + G        +T +W+K  E      G S++++S Y R  + V NRAV 
Sbjct: 131 YQSALKSLEDFGGS-TIPLENITIDWLKRCEKFWMSEGKSYSSISIYFRALKCVLNRAVH 189

Query: 111 CRGAVY---VPHLFRSVYTGTRADRKRALDTEDIQKVFTKLPQSSAVTSDMRRTQELFVL 167
             G +     P             RK AL   +I+KV +        T D+   ++L+V 
Sbjct: 190 -DGIIKESSFPFGKNKYEIPEGCGRKLALTLSEIKKVMSY----QCETKDIEEFRDLWVF 244

Query: 168 MFLLRGLPFVDLAYLRKSDLHDNVITYRRRKTGRP------LSVTLTPEAMAILKRYMN- 220
            +L  G+ F+DL +L+ S++ D  I + R KT R       +   +TPE   I++++ N 
Sbjct: 245 SYLCNGINFMDLLFLQYSNIMDGEICFVRSKTSRTTKHNKEIHAIITPEMWNIIQKWGNP 304

Query: 221 RDTSSPYLFPLLNSREGTKEAYHEYQLALR---NFNRQLMLLGEMLGLGDKLSSYTARHT 277
           R +   Y+F       GT++A+ + +L  R     NR+L  + + +G+  +L++YTARH+
Sbjct: 305 RLSPQTYIFKYAR---GTEDAFEKIRLVRRIITKCNRRLKKIAQDIGIF-QLTTYTARHS 360

Query: 278 WATTAYYCEIHPGVISEAMGHSSITVTETYLKPFRNKK 315
           +AT           ISE++GHS+++VTE YL  F  ++
Sbjct: 361 FATVLKRGGAKTSYISESLGHSNLSVTEHYLAYFEKEE 398