Pairwise Alignments

Query, 363 a.a., major outer membrane protein OmpA (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 375 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 62.4 bits (150), Expect = 2e-14
 Identities = 104/413 (25%), Positives = 167/413 (40%), Gaps = 95/413 (23%)

Query: 6   KLLIGIMAISVLPISAQEQRIKEPEKISFKPHWFIQAQIGAAHTVGEAKFTDLISPAAAL 65
           K  I ++A+ +   +A+ Q + E  K  F  +W ++   GA   +  + F     PA  +
Sbjct: 2   KKSIILLAMVLGAFTAKAQSVVEGTK--FADNWSVEVNAGAITPLTHSAFFKNARPAFGV 59

Query: 66  NVGYKFAPAFGARVGVSGWQAKGGWVN--PQQTYQYKYLQGNVDIMA--DLSTLFCGFN- 120
            +  +  P FG  +G  G     G++N  P +T    +   +V ++   +L  LF G+N 
Sbjct: 60  GLSKQLTPVFG--LGFQGM----GYINTTPSKT---AFDASDVSLLGKVNLMNLFAGYNG 110

Query: 121 PKRVFNGYLFAGAG--------------------LNRGFDNDEANALDTR-----TYEME 155
             R+F     AGAG                    LN  F+  E+ A          Y+M+
Sbjct: 111 TPRLFEVEAVAGAGWLHYYVNGDGDQNSWSTRFGLNLNFNLGESKAWTLGLKPAIVYDMQ 170

Query: 156 YLWQEGKF----------LVAG-----RFGLG----CDLRLNDRLSIN-IEANANALSDK 195
             + + K           L AG     +   G     ++R+ ++  I+ + A+ NAL  +
Sbjct: 171 GDFNQAKSRFNANNAAFELTAGLTYHFKSSTGNRYFTEVRVYNQGEIDDLNASINALRGQ 230

Query: 196 FNSKKAGNCDWQLNA----LVGVSIRLGKSYTKTAPVYYEPEPVVTEQPKPAPVVEQPQP 251
            N+K     D +LN+    + G+   L +  TK  PV    E VV     P  ++   Q 
Sbjct: 231 VNNK-----DGELNSANQKISGLQQELEECRTKVVPV----ETVVKTARVPESIITFRQG 281

Query: 252 KKEVVIEPLKQNIFFAINSAKIQDDQQAKIASLVEYLEKNATAKVSVTGYADKGTGNARI 311
           K  V                     Q   +  +  YL+K A AKV + GYA    G+A +
Sbjct: 282 KSSV------------------DASQLPNVERVASYLKKYADAKVVIKGYASP-EGSAEV 322

Query: 312 NSKLSEKRANNVVEALKAK-GIAADRITVAYKGDTVQPYNTPEENRVSICIAE 363
           N++++  RA  V   L  K  I A RIT   +G     +  P+ NRVSIC  E
Sbjct: 323 NARIAAARAEAVKTILVNKYKINASRITAEGQG-VGDMFTEPDWNRVSICTIE 374