Pairwise Alignments

Query, 524 a.a., Ribonuclease G (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1139 a.a., ribonuclease E from Serratia liquefaciens MT49

 Score =  263 bits (673), Expect = 2e-74
 Identities = 158/485 (32%), Positives = 267/485 (55%), Gaps = 30/485 (6%)

Query: 1   MTSEIVIDVQPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVDV 60
           M   ++   Q +E+ +AL++ + L +L  E         N+Y G+I ++ P L A FVD 
Sbjct: 1   MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60

Query: 61  GYEKDAFLHYLDLGPQFNSLEKFVKQTLSDKKKLNSISKATLLPDLDKDGTVANTLKVGQ 120
           G E+  FL   ++        ++     S   + N                + + L+ GQ
Sbjct: 61  GAERHGFLPLKEIA------REYFPSNYSSHGRPN----------------IKDVLREGQ 98

Query: 121 EVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLMSI 180
           EV+VQ+ KE    KG  LT+ IS AG YLVL+P N +     +    ++R  LK+ L S+
Sbjct: 99  EVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSL 158

Query: 181 K-PKNFGVIVRTVAEGKRVAELDGELKVLIKHWEDAMAKVQKATKYPTLIYEETSRAVGL 239
           + P   G+IVRT   GK    L  +L   +KHWE A+ K  +    P LI++E++  V  
Sbjct: 159 QLPDGMGLIVRTAGVGKSADALQWDLSFRLKHWE-AIKKAAEGRAAPFLIHQESNVIVRA 217

Query: 240 LRDLFNPSFENIHVNDEAVYNEIKDYVTLIA-PDRANIVKLYKGQLPIYDNFGITKQIKS 298
            RD   P    I +++  V +  K+++  +  PD ++ +KLY G++P++ ++ I  QI+S
Sbjct: 218 FRDYLRPDIGEILIDNPKVLDLAKEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIES 277

Query: 299 SFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVNLGAADELARQLRL 358
           +F + V   SG  ++I+ TEAL  +D+NS   T+  + +E  A   NL AADE+ARQLRL
Sbjct: 278 AFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEE-TAFNTNLEAADEIARQLRL 336

Query: 359 RDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAM 418
           RD+GG+IV+DFIDM    +++++  R+   +++DRAR  I  +S+FGL++++RQR+ P++
Sbjct: 337 RDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSL 396

Query: 419 DVNTTEICPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKKFSLHVHPYVAAFINQGLV 478
             ++  +CP C G GTI+ +    ++L   I  L+ +  +K+ +  VH  V   +   L+
Sbjct: 397 GESSHHVCPRCNGTGTIRDN----ESLALSILRLIEEEALKENTKEVHAIVPVQVASYLL 452

Query: 479 SLRRK 483
           + +R+
Sbjct: 453 NEKRE 457