Pairwise Alignments

Query, 524 a.a., Ribonuclease G (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1061 a.a., fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) from Escherichia coli BW25113

 Score =  259 bits (661), Expect = 5e-73
 Identities = 157/484 (32%), Positives = 264/484 (54%), Gaps = 30/484 (6%)

Query: 1   MTSEIVIDVQPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVDV 60
           M   ++   Q +E+ +AL++ + L +L  E         N+Y G+I ++ P L A FVD 
Sbjct: 1   MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60

Query: 61  GYEKDAFLHYLDLGPQFNSLEKFVKQTLSDKKKLNSISKATLLPDLDKDGTVANTLKVGQ 120
           G E+  FL   ++        ++     S   + N                + + L+ GQ
Sbjct: 61  GAERHGFLPLKEIA------REYFPANYSAHGRPN----------------IKDVLREGQ 98

Query: 121 EVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLMSI 180
           EV+VQI KE    KG  LT+ IS AG YLVL+P N +     +    ++R  LK+ L S+
Sbjct: 99  EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL 158

Query: 181 K-PKNFGVIVRTVAEGKRVAELDGELKVLIKHWEDAMAKVQKATKYPTLIYEETSRAVGL 239
           + P+  G+IVRT   GK    L  +L   +KHWE A+ K  ++   P LI++E++  V  
Sbjct: 159 ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWE-AIKKAAESRPAPFLIHQESNVIVRA 217

Query: 240 LRDLFNPSFENIHVNDEAVYNEIKDYVTLIA-PDRANIVKLYKGQLPIYDNFGITKQIKS 298
            RD        I +++  V    + ++  +  PD ++ +KLY G++P++ ++ I  QI+S
Sbjct: 218 FRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIES 277

Query: 299 SFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVNLGAADELARQLRL 358
           +F + V   SG  ++I+ TEAL  +D+NS   T+  + +E  A   NL AADE+ARQLRL
Sbjct: 278 AFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEE-TAFNTNLEAADEIARQLRL 336

Query: 359 RDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAM 418
           RD+GG+IV+DFIDM    +++ +  R+   +++DRAR  I  +S+FGL++++RQR+ P++
Sbjct: 337 RDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSL 396

Query: 419 DVNTTEICPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKKFSLHVHPYVAAFINQGLV 478
             ++  +CP C G GT++ +    ++L   I  L+ +  +K+ +  VH  V   I   L+
Sbjct: 397 GESSHHVCPRCSGTGTVRDN----ESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLL 452

Query: 479 SLRR 482
           + +R
Sbjct: 453 NEKR 456