Pairwise Alignments

Query, 465 a.a., protein rtcB (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 405 a.a., 'RNA-2',3'-PO4:RNA-5'-OH ligase' transl_table=11 from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  172 bits (436), Expect = 2e-47
 Identities = 129/383 (33%), Positives = 187/383 (48%), Gaps = 37/383 (9%)

Query: 94  IETLAKQQMNLAMRLPVTVGG-ALMPDAHAGYGLPIGGVLATDNAVIPYAVGVDIGCRMS 152
           +E  A+QQ+    ++P      A+MPD H G G  IG V+ T  A+IP AVGVDIGC M+
Sbjct: 23  VEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSVIPTKGAIIPAAVGVDIGCGMN 82

Query: 153 LTVFDAKADFLKRYSYQIKEALKDFTHFGMDGGLGF--------------EQEHEVLDRE 198
                  A  L      ++ A++     G   G G               E+  ++    
Sbjct: 83  ALRTSLTAADLPENLADLRSAIEAAVPHGRTTGRGHRDVGAWGNPPANVNEKWAQLEAGY 142

Query: 199 EFRLTPLLKDLQGKAVRQLGSSGGGNHFVEFGEIALQADNVLNLPEGSYVALLSHSGSRG 258
           ++      + L     + LG+ G GNHF+E           + L E   V ++ HSGSRG
Sbjct: 143 QWLTQKYPRFLNTNNYKHLGTLGTGNHFIE-----------ICLDETDRVWIMLHSGSRG 191

Query: 259 LGAAIAKHYSLLAREVCKLPRE---AQHFAWLSLDSEEGQEYWMSMNLAGDYARACHERI 315
           +G AI  ++  LA++  +   E   ++  A+ +  SE   +Y  +++ A  +A    E +
Sbjct: 192 IGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWAQQFASLNREAM 251

Query: 316 HLNLSKALGL---KPVA----NVNNHHNFAWKEEIAPGRMAIVHRKGATPAQKGQAGLIP 368
             N   AL     KP A     +N HHN+  KE+   G    V RKGA  A++G+ G+IP
Sbjct: 252 MENALAALQRCVEKPSALDMDEINCHHNYVQKEQHF-GEEIYVTRKGAVSARRGEFGIIP 310

Query: 369 GSMATAGYLVCGKGVEESLCSASHGAGRAMSRQKAKESFTQSALKKMLSQADVTLIGGSI 428
           GSM    ++V G G EES CS SHGAGR MSR KAK+ F+     +  +  +       I
Sbjct: 311 GSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAHVECRKDADVI 370

Query: 429 EEIPLAYKDIDRVMYTQETLVEV 451
           +EIP+AYKDID VM  Q  LVE+
Sbjct: 371 DEIPMAYKDIDAVMAAQSDLVEI 393