Pairwise Alignments

Query, 1042 a.a., TonB-dependent receptor for vancomycin (SusC-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1021 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  415 bits (1067), Expect = e-120
 Identities = 325/1107 (29%), Positives = 507/1107 (45%), Gaps = 157/1107 (14%)

Query: 2    RIYLRLLVAFLLLSAGNVVYAEAQQEKRVTGTVTSEGEPLPGVSVQVKGASSGTITDIDG 61
            +IY  LL  FL L++  +   + + +  VT   T+E  PLPGV+V+VKG  +GT+TD+DG
Sbjct: 4    KIYF-LLFFFLCLTSIPLAAQDIEIKGMVTEATTNE--PLPGVTVRVKGKDTGTVTDMDG 60

Query: 62   NYSIEAPANGTIVFRFVGLRTVEQAVNNRNVINVTMESESKELEEVMVVAYATAKKYSFT 121
             YSI+A     ++F  +G++ +E+AV +   INV+ME ++  LE+V+V+ Y T KK   +
Sbjct: 61   KYSIKANKGNILIFSTIGMKQIEKAVTSGTPINVSMEEDNIALEQVVVIGYGTVKKSHLS 120

Query: 122  GAASTMKAGEIEKLQTSSVSRVLEGTVSGVQASASSGQPGTDAEIRIRGIGSINASSAPL 181
            GA  ++ A E+     S+ +  L+G + GV  ++SSG P     I +RGI S++ ++ PL
Sbjct: 121  GAVGSVSAKELNGQVASNAATALQGKIPGVSVASSSGDPNGSMTINVRGISSLSNNN-PL 179

Query: 182  YVVDGVPFDGSVNSINPDDIASMTVLKDAASAALYGSRGANGVIIITTKQGQQDSKATVK 241
            YVVDG    G ++ ++P+DI+S+ VLKDAA+AA+YGSR A GV++ITTK G++D    + 
Sbjct: 180  YVVDGA--FGDISMVDPNDISSIEVLKDAAAAAIYGSRAAGGVVLITTKSGRKDMPTKLD 237

Query: 242  VKATLGGSSRAVRDYDRVNTNQY--FELYWEALRNQYAKSSDYTPATAATQASKDLVTKL 299
            V     G S+  +     N  +Y  F  Y++   + Y   +  TP               
Sbjct: 238  VNF-FTGVSQTPKTLKVFNGEEYSRFARYYKLAGDGYGAENGATP--------------F 282

Query: 300  MGGGPNPYGTQYPQPVGTDGKLAAGARPLWNSDWSDAMEQQALRTELNLSVSGGGKANQY 359
            +G G                           +DW D M + A+  + N ++SGG K   Y
Sbjct: 283  IGEG---------------------------TDWQDVMLRTAMTYKANATISGGSKNGSY 315

Query: 360  FFSAGYLNDKGIALESGYQRFNLRSNVTSEMTSWLKGSINLSFAHSMQNYPVSSDSKTSN 419
              S  YLN +GI   + ++ +N+R                            S  S   N
Sbjct: 316  SSSVSYLNKEGILRNTDHESYNIRLK--------------------------SDYSFFDN 349

Query: 420  VITAGRTMPGFYPICEMNTDGSYKLDDNGDRIYDFGS----YRPS-----GSMANWNLP- 469
             +T G +M     I  +     Y   D    I+ F S    Y P+     G+  + NLP 
Sbjct: 350  RLTIGESM-----IVNLTKGSGYIHQDTMFDIFQFPSVVPVYDPTNAGGWGTSNDINLPN 404

Query: 470  --ATLPLDKSERMKDEFSGRTYLEATIIEGLKFKTSFNFDLINYNTLDYTNP-KIGPALE 526
              A + ++       +     YL+A II+GLK+K +      +     Y +   +G   +
Sbjct: 405  PLAEMTVNDERTETTKIFLNAYLQAEIIKGLKYKLNVGIRKEHTKWRYYKDVYDLGTFGK 464

Query: 527  NGGGSSRLNSRTF-SWTWNNIASYDKTIGDHHFNVLAGMEAYSYRYDELTASRTKMAQ-- 583
            N        S T+ SW   N  +YD+T G H+ ++LAG  A   +   L      M Q  
Sbjct: 465  NDKPDLEEKSSTWESWVLENTLNYDRTFGKHNLSLLAGYSAQKDKSYSLYGKNGDMPQFI 524

Query: 584  PDMPELVVGSQLTGGSGYRIDYALVGYLTQALYDYQNKYFFSASFRRDGSSRFAPETRWG 643
              MP  V  S L   S    + ALV    + +Y + ++Y FSAS RRDGSSRF    ++G
Sbjct: 525  ETMPGNVDPSNLKASSSLN-ELALVSLFGRVMYSFDDRYLFSASIRRDGSSRFRSGHQYG 583

Query: 644  NFWSLGTSWRIDRESFMASTANWLSALTLKMSYGAQGNDNLGTYY-----ASKGLYTIVS 698
             F S    W I+RE F     N    L L+ SYG  GN  + +YY      S G+  +++
Sbjct: 584  AFPSASIGWNINREKFFKPLENVFDQLKLRFSYGKLGNQEMTSYYPTQSVVSDGMNYVMN 643

Query: 699  N---LGENALVSDRMATPNLKWETNLNFNVGVDFSLFNNRFSGSFDFFTRRSKDLLYSRP 755
            N    G    V   ++  NL WE    +N+G+D SL N R + + D + + + D+L   P
Sbjct: 644  NSPWFGSMPYV-QAISPANLTWENTETYNIGLDVSLLNGRLTLTADAYVKNTNDVLLPIP 702

Query: 756  IAPSLGY-GSIDENVGALKNTGIEMVLNGTIINQNGWVWKLGMNLTHYKNKVTELPL--- 811
               S G  G+  +N G ++N G E+ +N     +  + + +G N+   KN+VT++ L   
Sbjct: 703  STASTGISGNSIQNAGQVRNKGFELAVNYRGAIKEKFNYYIGANIAADKNEVTKITLGGQ 762

Query: 812  ---------KDMPQSGVNKLQVGRSVYDFYMKEWAGV-------------DPDNGNPLWY 849
                           G+N    G  +  F + E  G+             D +   P   
Sbjct: 763  NLMISGYSAHGAGGRGINMFAEGHPMSYFNLIETDGLFRSAEEIANYKNKDGELIQPAAQ 822

Query: 850  MDEKDANDNLTGKRVTTSDYASANYYYVNKSSLPKVYGGFNTSLSWKGFDLSAIFAYSIG 909
            + +    D     ++ T D           S  P    G      W  FD +  F   +G
Sbjct: 823  VGDVRYKDWNGDGKINTDDQHDVG------SPFPDFTFGIRLGGEWNNFDFNLFFDGMVG 876

Query: 910  GYIYNRDITMILHNGSLEGRDWSTEILKRWTPENRYTDVPALSTT---SNNWNSASTRFL 966
              IYN      L +G+  G + ST +   W P+N+ TD+P  S T    N W + + R+L
Sbjct: 877  NKIYNYP-RYRLESGNFNG-NMSTVLANSWRPDNQNTDIPRFSKTDGADNKW-AYTDRWL 933

Query: 967  QNNSYMRLKNLTLSYDLPKQWISKLALSSVQVFVQGDNLFTIHRNQGLDPEQG---ITGI 1023
            ++ SY+RLK L + Y LPK    K+ L +V+++   +NLFT+ +  G  P+ G   + G+
Sbjct: 934  EDGSYIRLKTLDIGYTLPKVLTKKIKLENVRIYTSMENLFTLTKYSGYTPDLGESSVAGV 993

Query: 1024 TYY---------RYPAMRTISGGINLS 1041
             Y          RYP  RTIS GI ++
Sbjct: 994  AYNVFSRGIDQGRYPLPRTISFGIQVN 1020