Pairwise Alignments

Query, 493 a.a., Outer membrane binding protein for vancomycin (SusD-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 495 a.a., SusD family. from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 57.4 bits (137), Expect = 1e-12
 Identities = 85/345 (24%), Positives = 133/345 (38%), Gaps = 74/345 (21%)

Query: 145 LRAFCYLHLVQHYQFTYLKDKDAPCVPIYTEPTTSGTKPKGKSTVAQVYQQIFDDLNLAQ 204
           LRA+ Y  LV+ ++   L     P   +Y  P T  T          VYQQI  DL+ A 
Sbjct: 135 LRAYFYFDLVRLFENIPLLTSPVPTSEMYDVPQTDPTT---------VYQQIESDLHAAI 185

Query: 205 DYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKA--------AEAARKGYSL 256
             L   V     +  +    +   L+ + YL   ++  AA+          E ++ GY L
Sbjct: 186 QTLPATVDLAT-EAGRATIGMARALLGKVYLHQEKFDLAAQEFAAVNGTPGETSQYGYKL 244

Query: 257 MTTTAE-------------YE-GFNNISNKEW-----IWGSPQTLSQSDASYNFYYLDAT 297
           +   A+             +E  F N SN +W       G+   +      YN    DA 
Sbjct: 245 LDNFADLWVVDNKFNSESIFEINFTNQSNGDWGCVGCTEGNVLNIMVGPRGYNAISPDAP 304

Query: 298 -YVGA----------YSSFMADPHL------MDTFVKGDIRLPLFQWMREGYLGYKKFHM 340
            +V            +S+   DP        +D+  K         +M  GY   KKF  
Sbjct: 305 DFVSGWSFLPFTEEFFSTIQGDPRSHATVANLDSLEKAGAVTYEKGYMNTGYF-LKKFAG 363

Query: 341 RSDDTA------------DLVLMRSAEMYLIEAEAKVRDGVALDQAVAPLNTLRTARGVG 388
           R  D +            ++  +R A+ YL+EAEA +R G    +A   ++ +R   G+ 
Sbjct: 364 READRSTGGGVMELNFRQNMYEIRLADTYLLEAEALIRGGGDSGRAQQLMDAVRARVGLS 423

Query: 389 NYDVTGKTKEQVIDEILMERRRELWGEGFGITDVLRNQKAVERMA 433
               T       ++ IL+ERR EL GEG    D++RN  A + ++
Sbjct: 424 PIPAT-------LENILIERRIELAGEGHRWFDLIRNGIAADELS 461