Pairwise Alignments

Query, 493 a.a., Outer membrane binding protein for vancomycin (SusD-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 447 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 58.9 bits (141), Expect = 3e-13
 Identities = 101/456 (22%), Positives = 169/456 (37%), Gaps = 75/456 (16%)

Query: 1   MKKIKIQSILTAVAGLFLATSCSSSFLDTEPTDAVSSDQVAVAGNAERLFNGAWYNLFEY 60
           MK+  + + L     L   T CS+   +  P D +  D ++ + +  +L NG +  + E 
Sbjct: 1   MKRFYMINYLLCGICLLWMTGCSNMLDEMRPKDKIPQDALSES-DLTKLLNGVYAEMEEL 59

Query: 61  GTTYANIGYRALQCQDDMMASDVVSRPKYGFNSSYQFNDVAIPSDGRTSFAWYLIYKTID 120
              +   G        D+   +  + P +  N          PS       W   +  + 
Sbjct: 60  VFKFYMDG--------DVKGENFKAGPGFSMNDPMSM----APSSKDVLGQWQKCFTALK 107

Query: 121 NCNTAI-----SIKGDSEELRQAQGQALALRAFCYLHLVQHY-QFTYLKDKDAPCVPIYT 174
             N  +     S   DS+ ++Q  G     RA  Y HLV  +     L+ +    VPI  
Sbjct: 108 QVNFLVETYEASSNKDSQVVKQTGGTGYYFRALIYYHLVTRWGGAPILRKRTYDVVPISP 167

Query: 175 EPTTSGTKPKGKSTVAQVYQQIFDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAY 234
           E              A V+  I +DL  A+  L  +       +F  +  V + L A+  
Sbjct: 168 E--------------ADVWNFIKEDLGKAESLLPEFT-----DRFYVSLSVCDALNAKVC 208

Query: 235 LLTGQWGEAAKAAE--AARKGYSLMTTTAEYEG--FNNISNKEWIWGSPQTLSQSDASYN 290
           L    +  AA  A+    +  ++L TT+AEY     +N ++KE I+       +S     
Sbjct: 209 LALKDYTNAAIYADRVITKSNFALSTTSAEYANAFISNSNSKELIFALAN--KRSTGLLL 266

Query: 291 FYY----LDATY-----VGAYSSFMADPHLMDTFVKGD----------IRLPLFQWMREG 331
           FY     +D T+        YS   AD  +    ++            I+ P       G
Sbjct: 267 FYQSVNDIDPTWDYSPSADCYSHLYADTSVKKQDIRAKAVFGADNSRIIKFP------NG 320

Query: 332 YLGYKKFHMRSDDTADLVLMRSAEMYLIEAEAKVRDGVALDQAVAPLNTLRTARGVGNYD 391
             G    + +   T  +V+ R AEMYLI+AEA     +     ++ L      R      
Sbjct: 321 STGQFVTNEQPSQT-PIVVARVAEMYLIKAEA-----LGATNGLSTLKEFMNKRYATVSL 374

Query: 392 VTGKTKEQVIDEILMERRRELWGEGFGITDVLRNQK 427
            +  +  +  ++IL ER REL+ EG    D+ R  +
Sbjct: 375 PSSMSDTEFQNQILDERHRELYAEGQRWYDLKRTNR 410