Pairwise Alignments

Query, 493 a.a., Outer membrane binding protein for vancomycin (SusD-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 442 a.a., hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 62.0 bits (149), Expect = 4e-14
 Identities = 103/436 (23%), Positives = 164/436 (37%), Gaps = 45/436 (10%)

Query: 4   IKIQSILTAVAGLFLATSCSSSFLDTEPTDAVSSDQVAVAGNAERLFNGAWYNLFEYGTT 63
           IK    +  V G  L +SC S +LD +P   V    +        L   A      YG  
Sbjct: 2   IKKIYFIMVVIGSILLSSCDS-YLDIQPVGQVIPTTLT---EYRALLTTA------YGLK 51

Query: 64  YANIGYRALQCQDDMMASDVVSRPKYGFNSSYQFNDVAIPSDGRTSFAWYLIYKTIDNCN 123
             +      +    M+  +  S+  Y  +   ++ND++ P DG   F W + Y  I   N
Sbjct: 52  LIDKSVTEFRTDIAMVTDNSNSQNFY--SEIEKWNDMS-PKDGTREFGWAVYYSVIYYAN 108

Query: 124 TAISIK-----GDSEELRQAQGQALALRAFCYLHLVQHYQFTYLKD--KDAPCVPIYTEP 176
             I+ K     G  E++ Q  G+A  LR + +  L   Y   Y K+   +   +PI  + 
Sbjct: 109 AIIANKDNIKEGSQEDIDQLVGEAYLLRGYMHFILANLYGQPYTKEGAPETKSIPIKWDL 168

Query: 177 TTSGTKPKGKSTVAQVYQQIFDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLL 236
                 P  ++TV +VY  I  D+  A+  L +         ++ +T  V+ + +R  L 
Sbjct: 169 DLEVVLP--RNTVKEVYTAILSDIESARG-LMHQKEWEAVYAYRFSTLSVDAMESRVRLY 225

Query: 237 TGQWGEAAKAAEAARKGYSLMTTTAEYEGFNNISNKEWIWGSPQTLSQSDASYNFYYLDA 296
            G W EA  AAE       ++   +  E  N+   K     +  T ++   +Y F+  D 
Sbjct: 226 MGNWKEAYDAAE------RILVQKSTLEDLNDPEAK---LPNNYTSAEMITAYEFFNDDV 276

Query: 297 TYVGAYSSFMADPHLMDTFVKGDIRLPLFQWMREGYLGYKKFHMRSDDTADLVLMRSAEM 356
           T     S+ +  P  M+   K D    L +       G K    +S         R+ E+
Sbjct: 277 T-----SASILIPAFME---KYDANKDLRRNKYYSLSGDKYISKKSGKAEHNCTFRTGEI 328

Query: 357 YLIEAEAKVRDGVALDQAVAPLNTLRTARGVGNY-----DVTGKTKEQVIDEILMERRRE 411
           YL  AEA  +     +     L  +        Y      V    +  +I EIL ER  E
Sbjct: 329 YLNAAEAAAQMNKLPEARTRLLQLMEKRYTPEGYAEKKKAVDAMNQADLIKEILEERALE 388

Query: 412 LWGEGFGITDVLRNQK 427
           L  EG    D+ R  +
Sbjct: 389 LAFEGHRWFDLRRTTR 404