Pairwise Alignments

Query, 305 a.a., transcription regulator, AraC family (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 300 a.a., transcriptional regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  392 bits (1006), Expect = e-114
 Identities = 187/303 (61%), Positives = 245/303 (80%), Gaps = 10/303 (3%)

Query: 1   MEENTKEMIVIDSVDRYNEIFGLETRHPLVSIIDLAKSTTWPTRAWFRYEV--YALYLKN 58
           MEE TK    I+S+D+Y+++FGLET HPLV++ID +K+T   T  ++R  +  Y+L+LK+
Sbjct: 1   MEEITK----IESIDQYDQLFGLETLHPLVNVIDFSKATK--TVDYYRMNIGFYSLFLKD 54

Query: 59  VKCGDIKYGRQYYDYQDGTIVCFAPGQITDLEMLPN--IQPNAHGILFHPDLIRGTALGQ 116
            KCGD++YGR+YYDYQ+GT+VC APGQ+  ++      I+  + G+LFHPDLIRGT+LGQ
Sbjct: 55  AKCGDLRYGRKYYDYQEGTVVCMAPGQVIGIDNRKQTPIRTKSIGLLFHPDLIRGTSLGQ 114

Query: 117 EIKKYSFFSYETNEALHISEEERQTVMDCLQKITIELEHSIDKHSRRLICANIGLLLDYC 176
            IK YSFFSYE NEALH+SE+ER+ V DC+ KI IELEH+IDKHS++LI  NI LLLDYC
Sbjct: 115 NIKHYSFFSYEVNEALHLSEQEREIVTDCIHKIQIELEHAIDKHSKQLIVRNIELLLDYC 174

Query: 177 MRFYERQFDTRNGVNKDIIVRFEHLLNEYFEGDAPQNQGLPSVKYFADKVFLSANYFGDM 236
           MRFYERQF TRN  NKDIIV+FE LL+EYF+      +GLPSVKYFADKV LS+NYFGD+
Sbjct: 175 MRFYERQFITRNQANKDIIVKFEQLLDEYFQNQTALTEGLPSVKYFADKVCLSSNYFGDL 234

Query: 237 VRKQTGKTVSEYIQDKMIELAKEQLMSSNKTMSQIAYEIGFQYPQHLSRMFKRIVGMTPN 296
           ++K+TGKT  EYIQ ++IELAKE+++  ++T+SQIAYE+GFQYPQH SR+FK+ VG TPN
Sbjct: 235 IKKETGKTAQEYIQHRIIELAKERILEGSQTVSQIAYELGFQYPQHFSRLFKKNVGCTPN 294

Query: 297 QFR 299
           +++
Sbjct: 295 EYK 297