Pairwise Alignments

Query, 386 a.a., diaminopimelate decarboxylase (EC 4.1.1.20) (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 420 a.a., diaminopimelate decarboxylase, PLP-binding from Escherichia coli BL21

 Score =  146 bits (369), Expect = 9e-40
 Identities = 122/390 (31%), Positives = 190/390 (48%), Gaps = 54/390 (13%)

Query: 16  PFYYYDTKVLRDTLSAINQEVAKYPSYSVHYAVKANANPKVLTIIRESGMGADCVSGGEI 75
           P + YD +++R  ++A+ Q         V +A KA +N  +L ++RE G+  D VS GEI
Sbjct: 27  PVWVYDAQIIRRQIAALKQFDV------VRFAQKACSNIHILRLMREQGVKVDSVSLGEI 80

Query: 76  RAAVRAGFPA----NKIVFAG--VGKADWEINLGLEYGIFCFNVESIPELEVINELAAAQ 129
             A+ AG+      + IVF    + +A  E    L+  +   N  S+  L+ + +++   
Sbjct: 81  ERALAAGYNPQTHPDDIVFTADVIDQATLERVSELQIPV---NAGSVDMLDQLGQVSPGH 137

Query: 130 NKIANVAFRINPDVGAHTHANIT-TGLAENKFGISMQDMDRVIDVALEMKNVKFIGLHFH 188
                V  R+NP  G H H+  T TG   +K GI   D+   +DV ++  +++ +G+H H
Sbjct: 138 R----VWLRVNPGFG-HGHSQKTNTGGENSKHGIWYTDLPAALDV-IQRHHLQLVGIHMH 191

Query: 189 IGSQILDMGDFIALCN----RVNELQDKLEARRILVEHINVGGGLGIDYGHPNRQSVPDF 244
           IGS + D      +C     +V E    L+A       I+ GGGL + Y     +   D 
Sbjct: 192 IGSGV-DYAHLEQVCGAMVRQVIEFGQDLQA-------ISAGGGLSVPY--QQGEEAVDT 241

Query: 245 KSYFATYAGQLK-----LRPYQTLHFELGRAVVGQCGSLISKVLYVKQGTKKKFAILDAG 299
           + Y+  +    +     L     L  E GR +V Q G LI++V  VKQ   + F ++DAG
Sbjct: 242 EHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAG 301

Query: 300 MTDLIRPALYQAYHKMENITSE------EPVEAYDVVGPICESSDVF----GKAID---L 346
             DL+RPA+Y +YH +  + ++       P     V GP+CES DVF    G  ++   L
Sbjct: 302 FNDLMRPAMYGSYHHISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRAL 361

Query: 347 NKVKRGDLIALRSAGAYGEIMASGYNCREL 376
            +VK GD + L   GAYG  M+S YN R L
Sbjct: 362 PEVKAGDYLVLHDTGAYGASMSSNYNSRPL 391