Pairwise Alignments

Query, 409 a.a., periplasmic component of efflux system (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 368 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  105 bits (261), Expect = 3e-27
 Identities = 101/382 (26%), Positives = 166/382 (43%), Gaps = 41/382 (10%)

Query: 1   MKTKKIILIAVAVAVVVGG-GIWFFTGSPAKHKVMYASAT-VSKGDISNSVTATGTIEPV 58
           MK    I+  V VA VV   G    T +    +V+   AT V+   ++      GT+ P+
Sbjct: 1   MKKFLWIIFVVGVAGVVSSCGSEANTQAGQGQQVISVHATSVTSKHVTGLDLYPGTVVPL 60

Query: 59  IEVEVGTQVSGIIDKIYVDYNSVVTKGQLIAEMDRVTLQSELASQQATYDGAKAEFEYQK 118
            E+E+  QVSG I+KI+V+    V KGQ + E+DR   Q+     QAT   AKA  E  K
Sbjct: 61  NEIEIRPQVSGYINKIFVEDGQEVAKGQKLYEIDRSKYQAAYEQAQATLKSAKANLERVK 120

Query: 119 KNYERSKGLHDKSLISDTDYEQALYNYQKAKSAFDSSKASLAKAERNLSYATITSPIDGV 178
           K+  R + L  +  I+    + A  +   A+S   S++A +     + +Y+ IT+P  G 
Sbjct: 121 KDLARYEALDKQEAIAKQQLDYAKADILTAESQVSSAEAQVRSTLTDYNYSVITAPFSGT 180

Query: 179 VISRDVEAGQTVASGFETPTLFTIAADLTQMQVVADVDEADIGGIEEGQR------ASFT 232
           V    V  G  V++G    +L    +    + V   V+E D+    +  +      ++FT
Sbjct: 181 VGISQVRLGAQVSAG---QSLLNTLSSNDPVLVDFVVNERDVRRFSKMMKNESLPDSTFT 237

Query: 233 VDAYPNDVF--DGVVTQIRLGDASSSSSASSSTSTVVTYEVVISAPNPDLKLKPRLTANV 290
           +    NDV+   G +T I       S           T  + +  PNPD +L P +T N+
Sbjct: 238 IQFGENDVYRHHGELTTIDRAVGRQSG----------TINMRVEFPNPDRELIPGMTLNL 287

Query: 291 TIFILDKKDVLSVPNRALRFTPEAPLIGKNDIVKDCEGEHKVWTREGTTFTAHPVEIGIS 350
            +   D  D +++P +A               V +  GE+ V+   G     H   + + 
Sbjct: 288 RVLNQDIGDQIAIPFKA---------------VTEQMGEYFVYV-VGDDSVVHQQNVQLG 331

Query: 351 NGISTEII--SGVAEGTKVITE 370
             +  EI+   G+  G K++ E
Sbjct: 332 TKVGAEIVVREGLKPGQKIVVE 353