Pairwise Alignments

Query, 409 a.a., periplasmic component of efflux system (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 428 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  133 bits (335), Expect = 9e-36
 Identities = 120/415 (28%), Positives = 197/415 (47%), Gaps = 58/415 (13%)

Query: 2   KTKKIILIAVAVA------VVVGGGIWFFTGSPAKHKVMYASATVSKGDISNSVTATGTI 55
           K+ K+I I   VA      +++G  + +  G  A+ +V    A  SK  I   V+A+G I
Sbjct: 5   KSNKLIYILGGVAGVLILFIIIGRALGW-VGGAAETEVETTKA--SKKTIVEKVSASGVI 61

Query: 56  EPVIEVEVGTQVSGIIDKIYVDYNSVVTKGQL---------IAEMDRVTL-----QSELA 101
           EP  EV++   V+G I ++ +     V +  L         I+ +DR        ++ LA
Sbjct: 62  EPETEVKLSPDVAGEIIELNISEGDSVKQNDLLVKIRPDNFISALDRTRANLNQQKANLA 121

Query: 102 SQQATYDGAKAEFEYQKKNYERSKGLHDKSLISDTDYEQALYNY--------------QK 147
             QA    ++A F+  K  YER+K L++ ++ISD+++EQA  +Y              + 
Sbjct: 122 QSQAALKRSEALFDRAKLQYERNKSLYESNVISDSEFEQATADYVSAENDLKAAQQSVEA 181

Query: 148 AKSAFDSSKASLAKAERNLSYATITSPIDGVVISRDVEAGQTVASGFE-TPTLFTIAADL 206
           A+    SS+AS+ +A  NL    + +P DG+V    VE G+ V    +   T     ADL
Sbjct: 182 AEYVVKSSQASVEEANENLRLTNVFAPTDGIVSKLLVEKGERVVGTQQMAGTEMLRIADL 241

Query: 207 TQMQVVADVDEADIGGIEEGQRASFTVDAYPN--DVFDGVVTQIRLGDASSSSSASSSTS 264
           + M+VV DV+E DI  I  G      VDAY +  + F GVVT I     ++S++  ++  
Sbjct: 242 SVMEVVVDVNENDIVRISLGDTTIIEVDAYSHTGEKFTGVVTSI-----ANSANEKATQD 296

Query: 265 TVVTYEVVISAPNPDLK----------LKPRLTANVTIFILDKKDVLSVPNRALRFTPEA 314
            V  +EV I   N   +           +P +TA+V I    K DVLSVP  A+    + 
Sbjct: 297 AVTEFEVEIRILNESYEKLITKENRYPFRPGMTASVEIITEKKADVLSVPLAAVTTRDDI 356

Query: 315 PLIGKNDIVKDCEGEHKVWTREGTTFTAHPVEIGISNGISTEIISGVAEGTKVIT 369
            +   N    + + +  ++  EG       V+ GIS+  + EI+ G+ EG ++++
Sbjct: 357 RVDSTN---AESDLQEIIFMSEGNKAHLTRVKTGISDFENIEILEGIKEGEELVS 408