Pairwise Alignments

Query, 409 a.a., periplasmic component of efflux system (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 406 a.a., efflux transporter, RND family, MFP subunit from Bacteroides ovatus ATCC 8483

 Score =  714 bits (1842), Expect = 0.0
 Identities = 364/407 (89%), Positives = 387/407 (95%), Gaps = 2/407 (0%)

Query: 1   MKTKKIILIAVAVAVVVGGGIWFFTGSPAKHKVMYASATVSKGDISNSVTATGTIEPVIE 60
           MKTKKIILIAVAV VV G GIWFF GSPAKHKV YA+A VSKGDISNSVTATGTIEPV E
Sbjct: 1   MKTKKIILIAVAVVVVAGAGIWFFAGSPAKHKVTYATANVSKGDISNSVTATGTIEPVTE 60

Query: 61  VEVGTQVSGIIDKIYVDYNSVVTKGQLIAEMDRVTLQSELASQQATYDGAKAEFEYQKKN 120
           VEVGTQVSGIIDKIYVDYNSVVTKGQLIAEMDR TLQSELASQQATYDGAKAE+EYQKKN
Sbjct: 61  VEVGTQVSGIIDKIYVDYNSVVTKGQLIAEMDRATLQSELASQQATYDGAKAEYEYQKKN 120

Query: 121 YERSKGLHDKSLISDTDYEQALYNYQKAKSAFDSSKASLAKAERNLSYATITSPIDGVVI 180
           YERSKGLH+KSLISDTD+EQALYNYQKAKS++DSSKASLAKAERNL+YATITSPIDGVVI
Sbjct: 121 YERSKGLHEKSLISDTDFEQALYNYQKAKSSYDSSKASLAKAERNLAYATITSPIDGVVI 180

Query: 181 SRDVEAGQTVASGFETPTLFTIAADLTQMQVVADVDEADIGGIEEGQRASFTVDAYPNDV 240
           SRDVEAGQTVASGFETPTLFTIAADLTQMQVVADVDEADIGG+ EGQRASFTVDAYPNDV
Sbjct: 181 SRDVEAGQTVASGFETPTLFTIAADLTQMQVVADVDEADIGGVVEGQRASFTVDAYPNDV 240

Query: 241 FDGVVTQIRLGDASSSSSASSSTSTVVTYEVVISAPNPDLKLKPRLTANVTIFILDKKDV 300
           F+GVVTQIRLGDASS+SS +S+T+TVVTYEVVISAPNPDLKLKPRLTANVTI+ILDKKDV
Sbjct: 241 FEGVVTQIRLGDASSTSS-TSTTTTVVTYEVVISAPNPDLKLKPRLTANVTIYILDKKDV 299

Query: 301 LSVPNRALRFTPEAPLIGKNDIVKDCEGEHKVWTREGTTFTAHPVEIGISNGISTEIISG 360
           LSVPN+ALRFTPE PLIG NDIVKDCEGEHK+WTREGTTFTAHPVE+GISNGISTEIISG
Sbjct: 300 LSVPNKALRFTPEKPLIGNNDIVKDCEGEHKLWTREGTTFTAHPVEVGISNGISTEIISG 359

Query: 361 VAEGTKVITEATIGAMPGESMDGEPGQ-GNGERSPFMPGPPGNNKKK 406
           ++EGTKV+TEATIGAMPGE++  E  Q   GERSPFMPGPPG+ KKK
Sbjct: 360 ISEGTKVVTEATIGAMPGENVAAEGNQESGGERSPFMPGPPGSKKKK 406