Pairwise Alignments

Query, 380 a.a., cytochrome D ubiquinol oxidase subunit II (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Paraburkholderia sabiae LMG 24235

 Score =  117 bits (294), Expect = 4e-31
 Identities = 104/395 (26%), Positives = 187/395 (47%), Gaps = 38/395 (9%)

Query: 2   YIFLQQYWWLVVSLLGAILVFLL---FVQGGNSLLFCLGKTEEHRKMMVNSTGRKWEFTF 58
           Y  L+  WW+++ +L  ++ F L   F  G   LL  +GKT+  R+++VN+ G  WE   
Sbjct: 3   YPTLKLIWWVLIGVL--LIGFALTDGFDMGAAILLPFIGKTDAERRIVVNTVGATWEGNQ 60

Query: 59  TTLVTFGGAFFASFPLFYSTSFGGAYWLWMIILFSFVLQAVSYEFQSKAGNLLGKKTYQT 118
             L+T GGA FA++PL Y+ SF G Y+  +++LFS   + V ++++ K  +   +  +  
Sbjct: 61  VWLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFSLFFRPVGFDYRGKRDDPRWRTAWDW 120

Query: 119 FLVINGVVGPLLLGGAVATFFTGSDFYINKANMTDTIMPVISHWGNGWHGLDALTNIWNV 178
            L I G V  L+ G A      G  F        D  + V  H         AL N + +
Sbjct: 121 ALFIGGFVPALVFGVAFGNLLQGVPFAF------DQDLRVTYH-----GSFFALLNPFAL 169

Query: 179 ILGLAVFFLARVLGSLYFINSIADKELTDKCRRAVLNNTIFFLVFFLV--FVIRTLVSDG 236
           + G+    +    G+  F+   AD  +  +   A+   ++  +  FL+   ++ TL+  G
Sbjct: 170 LCGVVSASMLAAHGAA-FVKMKADGIVARRASIALRVASLIAVGLFLIAGVLVSTLIG-G 227

Query: 237 FAV----------NPDTLEVYMQPYKYFINFIEMPVVLIIFLIGVVLVLFGIGKTVLKKT 286
           + +          NP    V   P  +  N+   P ++   + GVV  +  +   +    
Sbjct: 228 YQISEPAPLDTVANPLLKNVIGAPGLWLTNYAMYPWMIAAPIAGVVGGVLAL--VLANSR 285

Query: 287 FDKGIWFAGIGTVLTVLALLLVAGYNNTAY-YPSYTDLQSSLTLANSCSSEFTLKTMAY- 344
           F++    A + T L V+ ++L AG++   +  PS  D +SSLT+ +S SS+ TL+ M   
Sbjct: 286 FER---TAFLSTSLMVIGVILTAGFSMFPFIMPSSLDGRSSLTVWDSTSSQMTLQIMLIA 342

Query: 345 VSILVPFVIAYIFYAWRSIDRHKITEKEMDEGGHS 379
           V I +P ++ Y  + +R + R K+T   +++  H+
Sbjct: 343 VIIFLPLILIYTSWVYR-VMRGKVTADAIEQNHHT 376