Pairwise Alignments

Query, 380 a.a., cytochrome D ubiquinol oxidase subunit II (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 379 a.a., cytochrome d ubiquinol oxidase subunit II from Pectobacterium carotovorum WPP14

 Score =  120 bits (301), Expect = 6e-32
 Identities = 102/396 (25%), Positives = 187/396 (47%), Gaps = 40/396 (10%)

Query: 2   YIFLQQYWWLVVSLLGAILVFLL---FVQGGNSLLFCLGKTEEHRKMMVNSTGRKWEFTF 58
           Y  L+  WWL++ +L  ++ F +   F  G   L+  +G+ +  R++M+NS    W+   
Sbjct: 4   YEVLRFIWWLLIGIL--LIGFAITDGFDMGVGILVRLMGRGDTERRVMINSIAPHWDGNQ 61

Query: 59  TTLVTFGGAFFASFPLFYSTSFGGAYWLWMIILFSFVLQAVSYEFQSKAGNLLGKKTYQT 118
             L+T GGA FA++P+ Y+ +F G Y   +++L S   + V ++++SK  +   +  +  
Sbjct: 62  VWLITAGGALFAAWPMVYAAAFSGFYIAMILVLASLFFRPVGFDYRSKIEDPRWRGMWDW 121

Query: 119 FLVINGVVGPLLLGGAVATFFTGSDFYIN---KANMTDTIMPVISHWGNGWHGLDALTNI 175
            + I   V P+++G A      G  F+++   +   T     +++ +G     L  + ++
Sbjct: 122 GIFIGSFVPPVVIGVAFGNLLQGVPFHVDEYLRLYYTGNFFQLLNPFGL----LAGVVSL 177

Query: 176 WNVILGLAVFFLARVLGSLYFINSIADKELTDKCRRAVLNNTIFFLVFFLVFVIRTLVSD 235
             ++   A + + R  G L+  +  A          A ++  +  + F L  V      D
Sbjct: 178 TMILTQGATYLMMRTTGDLHVRSKSA----------AQISALVMMVTFALAGVWVVYGID 227

Query: 236 GFAV----------NPDTLEVYMQPYKYFINFIEMPVVLIIFLIGVVLVLFGIGKTVLKK 285
           G+ V          NP   EV  Q   + INF   PV+  I  +GV L +     T L  
Sbjct: 228 GYVVTSAINTAAESNPLRKEVVHQAGAWLINFNNHPVLWAIPALGVALPVL----TTLMA 283

Query: 286 TFDKGIWFAGIGTVLTVLALLLVAGYNNTAY-YPSYTDLQSSLTLANSCSSEFTLKTMAY 344
             +KG W A + + LT+  ++L AG     +  PS T    SLT+ ++ SS  TLK M  
Sbjct: 284 RAEKGAW-AFLFSSLTIACVILTAGIAMFPFIMPSVTVPNVSLTVWDATSSLLTLKVMTV 342

Query: 345 VS-ILVPFVIAYIFYAWRSIDRHKITEKEMDEGGHS 379
           V+ I VP V++Y  + +  +   +IT++++++  HS
Sbjct: 343 VAMIFVPIVLSYTAWCYYKM-FGRITKEQIEQNTHS 377