Pairwise Alignments

Query, 380 a.a., cytochrome D ubiquinol oxidase subunit II (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 379 a.a., cytochrome d ubiquinol oxidase subunit II from Pectobacterium carotovorum WPP14

 Score =  105 bits (263), Expect = 2e-27
 Identities = 96/394 (24%), Positives = 178/394 (45%), Gaps = 36/394 (9%)

Query: 2   YIFLQQYWWLVVSLLGAILVFLL---FVQGGNSLLFCLGKTEEHRKMMVNSTGRKWEFTF 58
           Y  L+  WW ++ LL   + F +   F  G   LL  LGKT+  R++M+N     W+   
Sbjct: 4   YETLRLIWWGLIGLL--FIGFAITDGFDMGVGILLRLLGKTDTERRVMINVIAPHWDGNQ 61

Query: 59  TTLVTFGGAFFASFPLFYSTSFGGAYWLWMIILFSFVLQAVSYEFQSKAGNLLGKKTYQT 118
             L+T  GA FA++P+ Y+ +F G Y+  +++L +   + V ++++SK  N   +  +  
Sbjct: 62  VWLITAAGALFAAWPMVYAAAFSGFYFAMILVLAALFFRPVGFDYRSKLENHRWRNMWDW 121

Query: 119 FLVINGVVGPLLLGGAVATFFTGSDFYINKANMTDTIMPVISHWGNGWHGLDALTNIWNV 178
            + I  VV  L+ G A+     G    ++K       + +  H      G   L N + +
Sbjct: 122 GIFIGSVVPTLVFGIALGNLLQGVPLSVDK------YLRLTYH-----GGFFGLLNPFGL 170

Query: 179 ILGLAVFFLARVLGSLYFINSIADKELTDKCRRAVLNNTIFFLVFFLV-----------F 227
           + G+    +    G++Y      D  L  + ++ VL  +    + FL+           +
Sbjct: 171 LAGVVSVAMIVAHGAIYLQMRTTD-ALQHRAQKTVLIASALMSLTFLLAGLWVVTGIDGY 229

Query: 228 VIRTLVSDGFAVNPDTLEVYMQPYKYFINFIEMPVVLIIFLIGVVLVLFGIGKTVLKKTF 287
           +I + +      NP   +V  Q   +  NF   P +  I  +GVVL  F    T L    
Sbjct: 230 LITSTLDKAAPSNPLNKDVVQQAGAWLTNFTAHPSLWAIPALGVVLPWF----TCLFSRL 285

Query: 288 DKGIWFAGIGTVLTVLALLLVAGYNNTAY-YPSYTDLQSSLTLANSCSSEFTLKTMAYVS 346
           ++  W   + + LT++ ++L AG     +  PS  D   SLT+ ++ SS+ TL+ M  ++
Sbjct: 286 NRCGW-GFLTSSLTIVCVILTAGITLFPFVMPSSFDPNVSLTIWDATSSQLTLQVMTILA 344

Query: 347 -ILVPFVIAYIFYAWRSIDRHKITEKEMDEGGHS 379
            I VP ++ Y  + +  +   ++  + ++E  HS
Sbjct: 345 CIFVPTILLYTSWCYYKM-FGRVDARYIEENKHS 377