Pairwise Alignments

Query, 380 a.a., cytochrome D ubiquinol oxidase subunit II (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 378 a.a., Cytochrome bd-II ubiquinol oxidase subunit 2 from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  107 bits (266), Expect = 7e-28
 Identities = 101/389 (25%), Positives = 175/389 (44%), Gaps = 44/389 (11%)

Query: 2   YIFLQQYWWLVVSLLGAILVFLL---FVQGGNSLLFCLGKTEEHRKMMVNSTGRKWEFTF 58
           Y  L+  WWL++ ++  ++VF++   F  G   LL  + + ++ R++++NS G  WE   
Sbjct: 4   YETLRFIWWLLIGVI--LVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61

Query: 59  TTLVTFGGAFFASFPLFYSTSFGGAYWLWMIILFSFVLQAVSYEFQSKAGNLLGKKTYQT 118
             L+  GGA FA++P  Y+ +F G Y   +++L S   + ++++++ K  +   +K +  
Sbjct: 62  VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121

Query: 119 FLVINGVVGPLLLGGAVATFFTGSDFYINKANMTDTIMPVISHWGNGWHGLD------AL 172
            LVI  +V P++ G A      G  F         T    + + G+ W  L        L
Sbjct: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAF-------TPQLRVEYLGSFWQLLTPFPLLCGL 174

Query: 173 TNIWNVILGLAVFFLARVLGSLYFINSIADKELTDKCRRAVLNNTIFFLVFFLVFVIRTL 232
            ++  VIL   V+   + +G ++  + +A K      R A+L    F L  + ++V    
Sbjct: 175 LSLGMVILQGGVWLQLKTVGVIHLRSQLATK------RAALLVMLCFLLAGYWLWV---- 224

Query: 233 VSDGFAV---------NPDTLEVYMQPYKYFINFIEMPVVLIIFLIGVVLVLFGIGKTVL 283
             DGF +         NP    V + P  +  NF+E PV+ I  L+G    L     TV+
Sbjct: 225 GIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLL----TVM 280

Query: 284 KKTFDKGIWFAGIGTVLTVLALLLVAGYNNTAY-YPSYTDLQSSLTLANSCSSEFTLKTM 342
                +  W   +   L    ++  AG     +  PS     SSLTL +S SS+ TL  M
Sbjct: 281 AIYRGRPGW-GFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIM 339

Query: 343 -AYVSILVPFVIAYIFYAWRSIDRHKITE 370
              V I +P V+ Y  +++  +     TE
Sbjct: 340 LVIVLIFLPIVLLYTLWSYYKMWGRMTTE 368