Pairwise Alignments

Query, 380 a.a., cytochrome D ubiquinol oxidase subunit II (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 379 a.a., cytochrome d ubiquinol oxidase subunit II from Escherichia coli ECRC99

 Score =  129 bits (325), Expect = 1e-34
 Identities = 104/393 (26%), Positives = 191/393 (48%), Gaps = 34/393 (8%)

Query: 2   YIFLQQYWWLVVSLLGAILVFLL---FVQGGNSLLFCLGKTEEHRKMMVNSTGRKWEFTF 58
           Y  L+  WWL+V +L  ++ F +   F  G   L   LG+ +  R++M+NS    W+   
Sbjct: 4   YEVLRFIWWLLVGVL--LIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61

Query: 59  TTLVTFGGAFFASFPLFYSTSFGGAYWLWMIILFSFVLQAVSYEFQSKAGNLLGKKTYQT 118
             L+T GGA FA++P+ Y+ +F G Y   +++L S   + V ++++SK      +  +  
Sbjct: 62  VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121

Query: 119 FLVINGVVGPLLLGGAVATFFTGSDFYIN---KANMTDTIMPVISHWGNGWHGLDALTNI 175
            + I   V PL++G A      G  F ++   +   T     +++ +G     L  + ++
Sbjct: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGL----LAGVVSV 177

Query: 176 WNVILGLAVFFLARVLGSLYFINSIADKELTDKCRRAVLNNTIFFLVFFLV------FVI 229
             +I   A +   R +G L+ + + A  ++      A++    F L    V      +V+
Sbjct: 178 GMIITQGATYLQMRTVGELH-LRTRATAQVA-----ALVTLVCFALAGVWVMYGIDGYVV 231

Query: 230 RTLVSDGFAVNPDTLEVYMQPYKYFINFIEMPVVLIIFLIGVVLVLFGIGKTVLKKTFDK 289
           ++ +    A NP   EV  +   + +NF   P++  I  +GVVL L     T+L    DK
Sbjct: 232 KSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLL----TILTARMDK 287

Query: 290 GIWFAGIGTVLTVLALLLVAGYNNTAY-YPSYTDLQSSLTLANSCSSEFTLKTMAYVS-I 347
             W A + + LT+  ++L AG     +  PS T + +SLT+ ++ SS+ TL  M +V+ +
Sbjct: 288 AAW-AFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVV 346

Query: 348 LVPFVIAYIFYA-WRSIDRHKITEKEMDEGGHS 379
           LVP ++ Y  +  W+   R  IT+++++   HS
Sbjct: 347 LVPIILLYTAWCYWKMFGR--ITKEDIERNTHS 377