Pairwise Alignments

Query, 380 a.a., cytochrome D ubiquinol oxidase subunit II (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 385 a.a., cytochrome d oxidase subunit II from Agrobacterium fabrum C58

 Score =  108 bits (271), Expect = 2e-28
 Identities = 112/402 (27%), Positives = 185/402 (46%), Gaps = 48/402 (11%)

Query: 2   YIFLQQYWWLVVSLLGAILVFLL----FVQGGNSLLFCLGKTEEHRKMMVNSTGRKWEFT 57
           Y  L+  WWL   LLG +L+       F  G  +LL  + KT+  R++++NS G  WE  
Sbjct: 9   YEILRVIWWL---LLGVLLIGFAVTGGFDLGTGALLPFVAKTDIERRVVINSIGPVWEGN 65

Query: 58  FTTLVTFGGAFFASFPLFYSTSFGGAYWLWMIILFSFVLQAVSYEFQSKAGNLLGKKTYQ 117
              L+  GGA FA++P  Y+ SF G Y      LF+ +L+ V ++++SK  +   +  + 
Sbjct: 66  QVWLILGGGAIFAAWPPLYAVSFSGFYLAMFATLFALILRPVGFKYRSKRESPAWRSGWD 125

Query: 118 TFLVINGVVGPLLLGGAVATFFTGSDFYINKANMTDTIMPVISHWGNGWHGLDALTNIWN 177
             L + G V  L+ G A+     G  F+ N     D +   I + G     L  L N + 
Sbjct: 126 WALFVGGFVPALIFGVAIGNVLQGVPFHFN-----DDLR--IFYDGT---TLFELLNPYA 175

Query: 178 VILGLAVFFLARVLGSLYFI----NSIADKELTDKCRRAVLNNTIFFL--VFFLVFV--- 228
           ++ GL    +  + G+ + +      +A +  +     A+    +F L  VF  + V   
Sbjct: 176 LLCGLVSVSMLVMHGAAWLVLKTEGPVAARARSFGSIAALATTVLFALGGVFLWLGVDGY 235

Query: 229 --IRTLVSDGFAVNPDTLEVYMQPYKYFINFIEMPVVLIIFLIGVV-----LVLFGIGKT 281
                +V+DG   NP +  V +    +F N+   P +++   +G+V      +LF   + 
Sbjct: 236 RFTSEVVTDG-PSNPLSKTVEVAGGVWFANYAAHPWMMLAPALGLVFPLFAFILFRARRE 294

Query: 282 VLKKTFDKGIWFAGIGTV-LTVLALLLVAGYNNTAYYPSYTDLQSSLTLANSCSSEFTLK 340
           VL         F  I TV LT+   +L          PS  D +SSLT+ ++ SS  TL 
Sbjct: 295 VLALLSSSLAIFGIIATVGLTMFPFIL----------PSSVDPRSSLTVWDASSSHMTLF 344

Query: 341 TMAYVS-ILVPFVIAYIFYAWRSIDRHKITEKEM-DEGGHSY 380
            M  V+ I VP ++AY  + +R +   K+ EK + D+ GH+Y
Sbjct: 345 NMLVVTLIFVPMIVAYTSWVYRVL-WGKVDEKAIRDDSGHAY 385