Pairwise Alignments

Query, 180 a.a., conserved hypothetical protein, putative transcriptional regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 214 a.a., putative protein YbdM from Escherichia fergusonii Becca

 Score =  137 bits (346), Expect = 1e-37
 Identities = 77/164 (46%), Positives = 110/164 (67%), Gaps = 6/164 (3%)

Query: 5   KSPVYEVKAVPVEKVLANDYNPNVVAPPEMKLLELSIWEDGFTMPCVCYYNKEEDNYILV 64
           + PV  V  V  ++V+ANDYNPNV++  E KLL+ S+ +DGFT P V   ++E+++Y++V
Sbjct: 48  QEPVDCVLWVKADEVVANDYNPNVMSSSEKKLLKHSLEQDGFTQPVVV--SEEKEHYLVV 105

Query: 65  DGYHRYTVLKTSKRIYKRENGLLPIVVID---KDLSNRMSSTIRHNRARGMHNIELMCNI 121
           DG+HR  +L       KR  G LP+  I+   K  ++R+++TIRHNRARG H I  M +I
Sbjct: 106 DGFHRQ-LLGRKADTRKRLKGWLPVACINPERKGQASRIAATIRHNRARGKHQITSMSDI 164

Query: 122 VAELDRAGMSDQWIMKNIGMDRDELLRLKQISGLADLFANREFS 165
           V +L R G +D+ I   +GMD+DE+LRLKQISGL +LF    FS
Sbjct: 165 VRDLSRLGWTDERIGTELGMDQDEVLRLKQISGLTELFQEENFS 208