Pairwise Alignments

Query, 1057 a.a., ATP-dependent helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 720 a.a., DNA helicase II from Dickeya dianthicola ME23

 Score = 52.8 bits (125), Expect = 9e-11
 Identities = 92/397 (23%), Positives = 155/397 (39%), Gaps = 82/397 (20%)

Query: 388 NVMIDEFQDTSRMQWGNFKLLLLEGLSQGADSLIVGDVKQSIYRWRNGDWGILNGLNDRI 447
           N+++DEFQDT+R+Q+   +LL       GA  +IVGD  QSIY WR           + I
Sbjct: 216 NILVDEFQDTNRIQYAWIRLL----AGDGAKVMIVGDDDQSIYGWRGAQ-------VENI 264

Query: 448 EHF-----PIKVKTLATNRRSETNVIRFNNQIFTAAVNYLNEVYKKQLGKDCDDLQKAYA 502
           +HF      +    L  N RS  N++         A N L      +LGK+       + 
Sbjct: 265 QHFLRDFSDVTTIRLEQNYRSTANILN--------AANALIAHNGDRLGKN------LWT 310

Query: 503 DVVQESPRSVQKGYVKATFLEPDEAHDYTDQTLISLGEEVEHLLSSGVRLNDIAILVRKN 562
           D +   P S+        F E DEA     +  I + +E      +G  L++ AIL R N
Sbjct: 311 DGIDGEPISLY-----CAFNELDEARFVVSR--IKVWQE------AGGALSECAILYRSN 357

Query: 563 KSIPRIAD-YFDKELHYKIVSDEAFRLDASLAICMMIDALRFLSDESNKIARAQLAIAYQ 621
                + +    + L Y+I      R      I   +  LR +++ ++  A  ++     
Sbjct: 358 AQSRVLEEALLQQSLPYRIYG--GMRFFERQEIKDALSYLRLMANRNDDAAFERVVNTPT 415

Query: 622 NEVLQKNLD-------------WNTLLLLPIENYL---PPAFLEKQKEL--------RLM 657
             +  + LD             W     L  E  L     A L++  EL          +
Sbjct: 416 RGIGDRTLDVVRQTARDRQLTLWQATRALLQEKVLAGRAAAALQRFLELVDALASDTADL 475

Query: 658 PLYELLEE------LFSIFKMSHIEEQDAYLFAFFDAVTDYLQSNSSELDGFIRYWDETL 711
           PL+   +       L+S+++    E+  A +    + VT   Q +  + D  +      L
Sbjct: 476 PLHVQTDRVIRDSGLWSMYEQEKGEKGQARVENLEELVTATRQFSYQDEDQDLLPLQAFL 535

Query: 712 CSKTIPSGE------VEGIRIFSIHKSKGLEFHTVLL 742
               + +GE       + +++ ++H +KGLEF  V +
Sbjct: 536 SHAALEAGEGQADAYQDAVQLMTLHSAKGLEFPQVFV 572



 Score = 42.7 bits (99), Expect = 9e-08
 Identities = 30/59 (50%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 2  SELLVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYG 60
          S +LV  A AGSGKT  L      LL +   +   I+AVTFTNKA AEM+ RI  QL G
Sbjct: 23 SNMLVL-AGAGSGKTRVLVHRIAWLLTVENCSPYSIMAVTFTNKAAAEMRHRI-DQLLG 79