Pairwise Alignments

Query, 1057 a.a., ATP-dependent helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1236 a.a., exodeoxyribonuclease V subunit beta from Dickeya dianthicola ME23

 Score = 64.7 bits (156), Expect = 4e-14
 Identities = 150/638 (23%), Positives = 245/638 (38%), Gaps = 110/638 (17%)

Query: 302 AKSSLMQILEDAEKLRSKNNLLLNSCRLSLQHLNKVQLLANIDEEVRQLNHDNNRFLLSD 361
           A  +L Q L D  + RS+  LL ++CR   Q     Q      E   Q+   +   LL+ 
Sbjct: 334 AMEALQQQLSDLPEPRSQ--LLRHACRWVSQRFRHEQ------ESRAQMGFQD---LLTR 382

Query: 362 TNALLHQLVKDGDSSFVFEKIGTNIRN----VMIDEFQDTSRMQWGNFKLLLLEGLSQGA 417
            +A L      GD+    E++   IR      MIDEFQDT  +Q+  F  L     +   
Sbjct: 383 LDAALR-----GDNG---ERLAQRIRRQFPVAMIDEFQDTDPLQYRIFDTLYRVADNDPQ 434

Query: 418 DSLI-VGDVKQSIYRWRNGD-WGILNGLNDRI-EHFPIKVKTLATNRRSETNVIRFNNQI 474
             LI +GD KQ+IY +R  D +  L    D    H+     TL TN RS   ++   NQ+
Sbjct: 435 QGLILIGDPKQAIYAFRGADIYTYLRARRDTDGRHY-----TLGTNFRSTQAMVGAVNQV 489

Query: 475 FTAAVNYLNE----VYKKQLGKDCDDLQKAYAD------VVQESPRSVQKGYVKATFLEP 524
           F  A N  +     ++++  G +        A+      +++ +  +    +  AT  +P
Sbjct: 490 FMQAENRADGAGAFLFRQPDGGNPVPFLPVQANGRDEAWILEGAAAAALTCWTLATD-QP 548

Query: 525 DEAHDYTDQTLISLGEEVEHLLSSG----------------VRLNDIAILVRKNKSIPRI 568
             + +Y  +       E+  LL  G                VR  D+A+LV   +    +
Sbjct: 549 LSSAEYRQRMAAGCAREMVRLLQLGGQGRAGFAVPGQALRPVRPGDMAVLVNTGREAMAV 608

Query: 569 -ADYFDKELHYKIVSDEAFRLDASLAICMMIDALRFLSDESNKIARAQLAIAYQNEVLQK 627
            A    + +    +SD     D+  A  +          E++++ RA LA          
Sbjct: 609 RAQLSARGVRSVYLSDRESVFDSPQAGELHCWLAACADPENDRLLRAALATPL------L 662

Query: 628 NLDWNTLLLLPIENY----LPPAFLEKQKELRLMPLYELLEELFSIFKMSH--IEEQDAY 681
            L W  L  L  +          F+  Q   R   +  +L  L   F +    +   +A 
Sbjct: 663 GLSWQALDRLNHDEQEWERRVMQFVRYQSCWRQQGVLPMLRRLMWEFDVPRRLLAADNAR 722

Query: 682 LFAFFDAVTDYLQSNSSELDG---FIRYWDETLCSKTIPSG---------EVEGIRIFSI 729
                  +++ LQ  S  LDG    IRY  E  C    P G         + + +++ ++
Sbjct: 723 ALTDVLHLSELLQQASVHLDGEHALIRYLAEQ-CQADNPGGDTLKLRLESDADLVKVVTV 781

Query: 730 HKSKGLEFHTVLLPF-CDWKLENETNNQLVWCAPQEAPFNAMDILPINYSTQMAESIYGN 788
           HKSKGLE+  V LPF C ++  N+ +  L +      P   +++   + + Q A+     
Sbjct: 782 HKSKGLEYPLVFLPFACAFRAVNQRDVPLKYHDDDGQP--RLELTASDEAVQRADH---- 835

Query: 789 DYLLERLQLWVDNLNLLYVAFTRAGKNLIIW-----SKKGQKGTMSELLANTLPVVALKE 843
               ERL    ++L   YVA TRA     +W      K+ +K     LL    P+   + 
Sbjct: 836 ----ERLG---EDLRKFYVALTRA--RYALWLGMAPLKELEKSAPGYLLGAGEPLEPAQL 886

Query: 844 GLDWEEDCYEQGELCP-----SEEEKAKTSTNKLTQKP 876
                  C     + P      E  +A+ +T  L Q+P
Sbjct: 887 AQPLSAWCGAHSRMAPLPETDDEVYRAELNTPALGQEP 924



 Score = 47.4 bits (111), Expect = 7e-09
 Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 14/62 (22%)

Query: 8  KASAGSGKTFTLAVEYIKLLI-----------LNPRAYRQILAVTFTNKATAEMKERILS 56
          +ASAG+GKTFT+A+ Y++L++           LNP    +IL VTFT+ AT E+++RI +
Sbjct: 24 EASAGTGKTFTIAMLYVRLVLGHGGEQAFSRPLNP---PEILVVTFTDAATRELRDRIRA 80

Query: 57 QL 58
          +L
Sbjct: 81 RL 82