Pairwise Alignments

Query, 1057 a.a., ATP-dependent helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1227 a.a., exodeoxyribonuclease V subunit beta from Dickeya dianthicola 67-19

 Score = 62.8 bits (151), Expect = 2e-13
 Identities = 135/564 (23%), Positives = 221/564 (39%), Gaps = 98/564 (17%)

Query: 302 AKSSLMQILEDAEKLRSKNNLLLNSCRLSLQHLNKVQLLANIDEEVRQLNHDNNRFLLSD 361
           A  +L Q L D  + RS  +LL ++CR   +     Q      E   Q+   +   LL+ 
Sbjct: 325 AMEALQQQLSDLPEPRS--HLLRHACRWVSRRFRHEQ------ESRAQMGFQD---LLTR 373

Query: 362 TNALLHQLVKDGDSSFVFEKIGTNIRN----VMIDEFQDTSRMQWGNFKLLLLEGLSQGA 417
            +A L      GD+    E++   IR      MIDEFQDT  +Q+  F  L     +   
Sbjct: 374 LDAALR-----GDNG---ERLAQRIRRQFPVAMIDEFQDTDPLQYRIFDTLYRVADNDPQ 425

Query: 418 DSLI-VGDVKQSIYRWRNGD-WGILNGLNDRI-EHFPIKVKTLATNRRSETNVIRFNNQI 474
             LI +GD KQ+IY +R  D +  L    D    H+     TL TN RS   ++   NQ+
Sbjct: 426 QGLILIGDPKQAIYAFRGADIYTYLRARRDTDGRHY-----TLGTNFRSTQAMVGAVNQV 480

Query: 475 FTAAVNYLNE----VYKKQLGKDCDDLQKAYAD------VVQESPRSVQKGYVKATFLEP 524
           F  A N  +     ++++  G +        A+      +++ +  +    +  AT  EP
Sbjct: 481 FMQAENRADGAGAFLFRQPDGGNPVPFLPVQANGRDEAWILEGADAAALTCWTLATD-EP 539

Query: 525 DEAHDYTDQTLISLGEEVEHLLSSG----------------VRLNDIAILVRKNKSIPRI 568
             + +Y  +       E+  LL  G                VR  D+A+LV   +    +
Sbjct: 540 LSSAEYRQRMAAGCAREMVRLLQLGGQGRAGFAVPGQALRPVRPGDMAVLVNTGREAMAV 599

Query: 569 -ADYFDKELHYKIVSDEAFRLDASLAICMMIDALRFLSDESNKIARAQLAIAYQNEVLQK 627
            A    + +    +SD     D+  A  +          E++++ RA L           
Sbjct: 600 RAQLSARGVRSVYLSDRESVFDSPQAGELHCWLAACADPENDRLLRAALGTPL------L 653

Query: 628 NLDWNTLLLLPIENY----LPPAFLEKQKELRLMPLYELLEELFSIFKMSH--IEEQDAY 681
            L W  L  L  +          F+  Q   R   +  +L  L   F++    +   +A 
Sbjct: 654 GLSWQALDRLNHDEQEWERRVMQFVRYQSCWRQQGVLPMLRRLMWEFEVPRRLLAADNAR 713

Query: 682 LFAFFDAVTDYLQSNSSELDG---FIRYWDETLCSKTIPSG---------EVEGIRIFSI 729
                  +++ LQ  S  LDG    IRY  E  C    P G         + + +++ ++
Sbjct: 714 ALTDVLHLSELLQQASVHLDGEHALIRYLAEQ-CQADNPGGDTLKLRLESDADLVKVVTV 772

Query: 730 HKSKGLEFHTVLLPF-CDWKLENETNNQLVWCAPQEAPFNAMDILPINYSTQMAESIYGN 788
           HKSKGLE+  V LPF C ++  N+ +  L +      P   +++   + + Q A+     
Sbjct: 773 HKSKGLEYPLVFLPFACAFRAVNQRDVPLKYHDDDGQP--RLELTVSDEAVQRADH---- 826

Query: 789 DYLLERLQLWVDNLNLLYVAFTRA 812
               ERL    ++L   YVA TRA
Sbjct: 827 ----ERLG---EDLRKFYVALTRA 843



 Score = 46.6 bits (109), Expect = 1e-08
 Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 14/62 (22%)

Query: 8  KASAGSGKTFTLAVEYIKLLI-----------LNPRAYRQILAVTFTNKATAEMKERILS 56
          +ASAG+GKTFT+A+ Y++L++           LNP     IL VTFT+ AT E+++RI +
Sbjct: 24 EASAGTGKTFTIAMLYVRLVLGHGGEQAFSRPLNP---PDILVVTFTDAATRELRDRIRA 80

Query: 57 QL 58
          +L
Sbjct: 81 RL 82