Pairwise Alignments

Query, 1057 a.a., ATP-dependent helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1088 a.a., ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  484 bits (1246), Expect = e-140
 Identities = 331/1086 (30%), Positives = 554/1086 (51%), Gaps = 50/1086 (4%)

Query: 5    LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYGIQIG 64
            ++YK+SAGSGKT+TL +EY+KL +  P A+R ILAVTFTNKAT EMK RIL  L  ++  
Sbjct: 7    IIYKSSAGSGKTYTLTLEYLKLALAQPMAFRGILAVTFTNKATQEMKGRILEVLGRLKNE 66

Query: 65   DKDSEAYLNRIKEETKKTEQEIREAAGIALGYMLHDYSRFRVETIDSFFQSVMRNLAREL 124
             +  E    ++ +  +  E+ ++  A + L  +LHDY+ F V TIDSFFQ V+R  ARE+
Sbjct: 67   VRPQEFLDQQLMQHLQLDEEGLKSRASVVLSAILHDYANFSVSTIDSFFQKVVRAFAREI 126

Query: 125  ELSPNLNIELNNAEVLSDAVDSMIEKLGPTSPVLAWLLDYINERIADDKRWNVSDEVKNF 184
            +L    ++ L+ A VL   VD +++ +     +  WL+DY   +I + + W++   +++ 
Sbjct: 127  DLQAKFDVALDQAAVLERVVDRVVQHVMDDPYLHKWLVDYALTKIQEGRSWDIRSNIRDL 186

Query: 185  GRNIFDEGYIEKGEGLRQRLRNPDTIKEYRKQLKALETEILEQMKGFYDQFEGELEGHAL 244
            G  IF E + +  + +R+ L +   +  +R  L   +  + ++      +     +   L
Sbjct: 187  GMEIFTENFKQYQQLIREFLSSEQNLDIFRNYLNTKKQALYKKASEMKMEANSIRQQFGL 246

Query: 245  TADELKNGSRGIGSYFRKLNNGILSNDIRNATVEK--CLEDAKHWATKTSPRFADIIDLA 302
               +   G R     F KL  G  +N I   T  +   +++   W +KTS +   II   
Sbjct: 247  EWTDFPYGRRSFAMLFDKL--GEHTNPIPELTESRKVAIDNESKWYSKTSKQKDAIISAY 304

Query: 303  KSSLMQILEDAEKLRSKNNLLLNSCRLSLQHLNKVQLLANIDEEVRQLNHDNNRFLLSDT 362
             + L  I  +   LR K  L   +  ++        +  N+ EE+R L  + N  ++SD 
Sbjct: 305  HAGLGDIYREFVPLR-KEWLTYQAIDMNFYAYG---IFRNLLEELRDLKDEENILMISDA 360

Query: 363  NALLHQLVKDGDSSFVFEKIGTNIRNVMIDEFQDTSRMQWGNFKLLLLEGLSQGADSLIV 422
            N  L ++ K+ D+ F++EK+G   ++ +IDEFQDTS  QW +FK LL   L     +L+V
Sbjct: 361  NDFLKEITKENDAPFIYEKVGNQYKHFLIDEFQDTSGFQWDSFKPLLENSLGYEHTNLVV 420

Query: 423  GDVKQSIYRWRNGDWG-ILNGLNDRIEHFPIKVKTLATNRRSETNVIRFNNQIFTAAVNY 481
            GDVKQSIYRWR GD   +L  + + I    I+VK L TN RS  NV+ FNN +F+A    
Sbjct: 421  GDVKQSIYRWRGGDMKLLLEKVEEDIGPSSIQVKGLDTNYRSLPNVVAFNNALFSALPAQ 480

Query: 482  LNEVYKKQLGKDCDD-LQKAYADVVQESPRSVQ----KGYVKATFLE---PDEAHDYTDQ 533
            L   ++++ G      L KAY DV Q+ P +      KG V+  FLE    +E   Y + 
Sbjct: 481  LESTFERETGHQRPGILTKAYQDVAQKVPSAKNEGDFKGLVRMEFLETSNEEEEPGYEEA 540

Query: 534  TLISLGEEVEHLLSSGVRLNDIAILVRKNKSIPRIAD--------YFDKELHYKIVSDEA 585
             L  + E V  L   G R  DIA LVRK      I D        + + E  + +VSDE+
Sbjct: 541  VLAKIPEMVMTLQDQGYRPKDIAFLVRKKHQGAMITDALMAYKHEHPELEYSFDVVSDES 600

Query: 586  FRLDASLAICMMIDALRFLSDESNKIARAQLAIAYQNEVLQKNLDWNTLLLLPIENYLP- 644
              L  +  +  +I AL +L+D ++ +   Q    Y + +  K +       L    +L  
Sbjct: 601  MFLSKAATVKALIAALNYLADPADPVP-FQTMWFYWSSLNGKPISHEVFSSLEKPAWLAE 659

Query: 645  --PAFLEKQKELRLMPLYELLEELFSIFKMSHIEEQDAYLFAFFDAVTDYLQSNSSELDG 702
               AF ++++ +  +PL ELLEEL  I   + +  + AY+  F +AV DY+ +N ++L G
Sbjct: 660  KIAAFEKEEQRIARLPLMELLEELVDILGFNDLRTELAYISGFKEAVYDYVANNRADLSG 719

Query: 703  FIRYWDETLCSKT--IPSGEVEGIRIFSIHKSKGLEFHTVLLPFCDWKLENETNNQLVWC 760
            F+ +W+E    +T  IP G  + + I +IHKSKGL++  VL+PF  W++ + + + ++W 
Sbjct: 720  FLNWWEENSEKRTVKIPEGH-DAMPIMTIHKSKGLQYKVVLMPFLTWRIVDYSKDNIIWS 778

Query: 761  APQEAPFNAMDILPINYSTQMAESIYGNDYLLERLQLWVDNLNLLYVAFTRAGKNLIIWS 820
              ++   +   ++P+    ++A+SI+   +L E    ++D LN++YVA TRA +  ++W+
Sbjct: 779  PFRDTAEDVEAVIPLTLKKELADSIFQPVHLEEVTMAYLDTLNMIYVALTRAEE--VLWT 836

Query: 821  -------KKGQKGTMSELLANTLPVV---ALKEGLDWEEDCYEQGELCPSEEEKAKTSTN 870
                   K+  K +++ L  N L +V    LK       +C++Q           + S  
Sbjct: 837  LSPKKVVKQTTKISLNSLEKNLLELVEQGKLKTDSHDFSECFDQDLNVFEWGAWPEGSRA 896

Query: 871  KLTQKPDKLPVHMESMRHEIEFRQSNRSADFIQGIEEEESDDRFIHRGRMLHTLFSAIET 930
                +P +      + RH  E  +  + A  +   EE  +       G ++H L    ++
Sbjct: 897  SPAIRPAEDQWLTWNHRHWGELLEVKKYA--VDFSEEGLAQRHKRSFGLLIHELLEKSDS 954

Query: 931  AEDIDPAIERLIFEGVIASSEKAEEIREVARKAFSSPEIQNWYSGEWTLFNECAIIYKEK 990
             +     ++   FEG +   E++  + E   K F + + ++W+ GE  +  E  +I    
Sbjct: 955  HQAAMDQLQAFYFEGRLDQEERS-LVSEQLDKLFINEQFRSWFEGEGRVLTEQGVILPGG 1013

Query: 991  GVLQTRRPDRVMMKDGQVVVVDFKFGKENLQYNKQVKGYMQLLTKMGYKNITGYLWYVDE 1050
               + +RPDR+++KD    VVDFK G+E  +Y +QV+ YMQL+  +G+  + G+L Y++ 
Sbjct: 1014 ---RQKRPDRIVIKDNVAEVVDFKTGEELDKYQRQVREYMQLVAGLGHFQVRGFLCYLET 1070

Query: 1051 ELIVKV 1056
              IV+V
Sbjct: 1071 GKIVEV 1076