Pairwise Alignments

Query, 560 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 425 a.a., pectate lyase from Pectobacterium carotovorum WPP14

 Score =  142 bits (357), Expect = 3e-38
 Identities = 123/392 (31%), Positives = 175/392 (44%), Gaps = 67/392 (17%)

Query: 83  PAFPGAEGGGMYTPGGRGGKVIVVTSLEDSGPGTFREACETGGARVIVFNVSGIIRL-KS 141
           PA P  +G G  T  G GG++I VT+L  SG G+ REA    G R+IVF V GII L KS
Sbjct: 29  PAAPELKGFGTDTVAGSGGRIIRVTTLASSGAGSLREALAAKGPRIIVFEVGGIIDLNKS 88

Query: 142 PISVRAPYVTIAGQTAPGDGICVTGHSFLIDTHDVVIRHMRFR-----RGAQDVAFRDDA 196
            + +  P+VTIAGQTAP  GI +      I THDV+++H+RFR      G +    RD +
Sbjct: 89  DLRLSEPFVTIAGQTAPSPGITIIRGGMGISTHDVLMQHIRFRIGDAGTGKKSGFERDVS 148

Query: 197 VGGNAVGNIIIDHCSASWGLDENMSIYRHVYNRDE-TGHGLKLPTVNITIQNSMFSEALD 255
           + G    N++IDH S +WG DEN+SI    Y+  + T H        IT+ N++ +E L 
Sbjct: 149 INGKDAYNVVIDHSSFAWGTDENLSISGPRYDGPQGTAH-------RITLSNNIVAEGLY 201

Query: 256 TYNHAFGATIGG---HNSM----FCRNLFASNISRNSSVGMDGDFNFVNNVVFNWWNRSV 308
              H  G    G   H+++       +L+A N  RN+          VNN+++N     V
Sbjct: 202 DSAHTKGIHSMGTLVHDNVTDVSIVGSLYAHNNERNAWFKAGSTGVMVNNLIYNPGIWGV 261

Query: 309 DGGDNKSFYNIINNYFKPGPITPLDKPISYRILKPEAGRDKSKPMSFGKAYVNGNIVHGN 368
             G  K  +         G   P    +S                      V GN++H  
Sbjct: 262 RVGGVKGEWE--------GKTMPASPRVS----------------------VAGNVMHYG 291

Query: 369 AK------VTKDNWDGGVQLASEVD---EGKFLPQIRVD--EAFKMSPV-----TIMDTK 412
           A       +   N  G V ++  +    +GK  PQ         K+SP+     T     
Sbjct: 292 ANTKAGLGLVGSNSSGDVWMSDNLAYDAQGKTAPQTSGSGINLLKVSPIWPAGLTASPAS 351

Query: 413 KAYNFVLDNVGATLPKRDAVDARVIKTVQTGK 444
              N VL + GA    RDAVD R+++  +  K
Sbjct: 352 AVTNQVLQSAGARPKDRDAVDKRIVENFKQRK 383