Pairwise Alignments

Query, 163 a.a., ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 191 a.a., RNA polymerase sigma-70 factor, Bacteroides expansion family 1 from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 64.7 bits (156), Expect = 8e-16
 Identities = 40/158 (25%), Positives = 85/158 (53%), Gaps = 5/158 (3%)

Query: 3   AFSQLYDLHINILFNYGLKLTIDKELLKDCIHDIFVKLYTKKDELGTIDNLKSYLFISLK 62
           AF  LYD +   ++     +T D+EL KD + +IF+ L+ ++++L  I NL +YL+ + K
Sbjct: 22  AFESLYDKYWEKIYAVSSAVTKDQELSKDIVQEIFLDLWNRREKL-AIKNLYAYLYQASK 80

Query: 63  NKLCDELRKRMYMSDTAIEDVNAVAPTDVEDDYMEEEQRKNEFSLVKRLLDQLSPRQREA 122
            +L + +RK+    +  +E+ N +      +DY+  ++ +     +K  L++LSP+ +  
Sbjct: 81  YRLIEHIRKQ-EQQEQFLEEFNQILSHCPVEDYLFHKELE---LTIKESLEELSPKCKRI 136

Query: 123 LTLYYIEEKKYEDICEIMNMNYQSVRNLMHRGLTKLRS 160
             L   +     +I + + ++  +V N +++ L  LR+
Sbjct: 137 FYLSRYDHLSNHEISQQLKISKSTVENHINKALNHLRN 174