Pairwise Alignments

Query, 163 a.a., ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 190 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 65.9 bits (159), Expect = 4e-16
 Identities = 45/162 (27%), Positives = 86/162 (53%), Gaps = 10/162 (6%)

Query: 3   AFSQLYDLHINILFNYGLKLTIDKELLKDCIHDIFVKLYTKKDELGTIDNLKSYLFISLK 62
           AF   + L+   LF YG K T  +++++D I D+F+ L+ K+       ++K YLF + +
Sbjct: 22  AFGYSFTLYSKDLFRYGQKFTGARQVVEDSIQDVFLDLWHKRKTTNIEQSIKFYLFTAFR 81

Query: 63  NKLCDELRKRMYMSDTAIEDVNAVAPTD-VEDDYMEE---EQRKNEFS-LVKRLLDQLSP 117
            ++  +L K         E ++  AP   +E  +ME    +Q KNE +  + + +  LS 
Sbjct: 82  REIIRKLSKLRQQ-----EPMDYFAPEQLLEASHMEGIILQQGKNESNQQLYKAIRNLSE 136

Query: 118 RQREALTLYYIEEKKYEDICEIMNMNYQSVRNLMHRGLTKLR 159
           RQREA+ L +     Y++I  +M ++ +++ NL+ + +  L+
Sbjct: 137 RQREAVYLRFFANLNYKEISGMMGISVEALYNLIFKSIKILK 178