Pairwise Alignments

Query, 163 a.a., ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 182 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 61.6 bits (148), Expect = 7e-15
 Identities = 40/163 (24%), Positives = 80/163 (49%), Gaps = 6/163 (3%)

Query: 3   AFSQLYDLHINILFNYGLKLTIDKELLKDCIHDIFVKLYTKKDELGTIDNLKSYLFISLK 62
           AF   Y++  + LF         +E  ++ + DIF+KL+ ++D L  + N++ Y FI +K
Sbjct: 21  AFRDFYNMTYDRLFRIAYYYVKQEEWSQEIVLDIFLKLWKQRDTLLDVKNIEDYCFILVK 80

Query: 63  NKLCDELRKRMYMSDTAIEDVNAVAPTDVEDDYMEEEQRKNE--FSLVKRLLDQLSPRQR 120
           N   + L K    +    + +    P   E  Y  EE   +E  F++  + LD+L  R R
Sbjct: 81  NASLNYLEKESKYTTIHSDSL----PEPQEQSYSPEESLISEELFAIYVKALDRLPERCR 136

Query: 121 EALTLYYIEEKKYEDICEIMNMNYQSVRNLMHRGLTKLRSLAS 163
           E       E++ Y  + E ++++ ++V   + + +++L+ + S
Sbjct: 137 EIFIRIREEKQSYAQVAEELDISIKTVDAQLQKAVSRLKEMIS 179